BtaINT0141656 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005356 | ST5
Description
Bos taurus suppression of tumorigenicity 5 (ST5), mRNA. [Source:RefSeq mRNA;Acc:NM_001098093]
Coordinates
chr15:44421041-44426373:+
Coord C1 exon
chr15:44421041-44422300
Coord A exon
chr15:44422301-44426236
Coord C2 exon
chr15:44426237-44426373
Length
3936 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
ATACTCTTTGTCATCCACAGAAA
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTCTCAGTCAGTCTCTCCACCTCCGGTTCTCTCCCCACCGAGGAGTCCCATCTACCCGCTCAGTGACAGTGAGACGTCAGCCTGCAGGTACCCAAGCCGCTCCGGTTCCCGGCTGCTCCTCAAGGACTGGCATCACCGTGAGCCTTCACCCCAGCATCCTCAAGCCCCCTCCCCCAACACCTCACCACCCGTCTGTCCCCTCAAGGCCACCAGCTTTGGTTATCTGGACAGAAGCCCTGTTGTGTGCAAGAGAGAGGACCAGAAGGAGAACATCCGGGGGGCAGCCCAAAATGTAGAGGGCATTGTTGCTTCCCCGCCGCTCGCCCAGAGCACTCCGTCCCTGGGGTCAGCAGTGGGCCCCCGGAGTGTCTTTCTGAACCGCACTGGCCCCCGTGCCCACAGCCTGGGCATCCGGGAGAAGATTTCAGCATGGGAGGGTCGCCAAGAGGCTTCGCCCAGGATGAGCGTGTGTGGAGAGAAGCGGGAGGGCTCTGGGGGTGAGTGGGCGGCCAGTGAGGGCTGCCCCAGCGTGGGCTGCCCCAGCGTGGTGCCGTCCCCCTGCAGCTCGGACAAGACCTTCGACTTCAGGGGCCTCCGGAGGATGAGCAGGACCTTCTCTGAGTGTTCCTACCCTGAGACCGAGGAGGAGGGAGAGGCGCTCCCTGTGCGGGACTCTTTCTACCGGCTGGAGAAACGGCCAGGCCGGAGCGAGCCCAGTGCCTTACTCAGGGGGCACAGCAGCAGGAAGGAGAGCTCAGCGGTGCTGAGTCGGATCCAGAAAATTGAACAGGCCCTGAAGGAGCAGCCAGGCCGGGGGCTCCCCCAGCTCCCCAGCAGCTGCTACAGCGTAGACCGAGGGAGATGGAAGACTGGGACCTTGGGCCCCTTGGAGGAACCCACAGGGAACGCGAGTGTGAGCACTGACAGCCGGGCAGGAGGAGCGGCTGGAGTTGGGGGGGAGGCGGGCCCACCCCCGGAGAGGGAAGGCAGTGGCCCCGCTAAGCCAGGGACCCCTGGAAATAGCCCGACCTCCCAGCTGCTGCCGCCGAAGAGCTCCCCTGATCCCGCTGTGAACCCTGTCCCCAAACCCAAGCGCACCTTTGAATATGAGGCTGACAAGAACCCCAAGAGTAAGCCAAGCAATGGTCTACCTCCTCCACCCACACCTGCTGCTCCACCCCCCCTGCCCTCCACCCCAGCCCCACCCGTCACCCGGAGACCCAAGAAGGACACACGAGGTCACCGCAAGTCCCAGAACAG
Seq A exon
GTAACGAATGCCCCTCCAGTGATGCAGAGCTGGGCACAGCGGCTTTGTTTTCGATGGAGGATGCAGGAGCAGACTATGGTTGCGGGTCACAGTTAGTACTCTGTAAATTCTGGAGCAGCAGATGATGTTAGGTGAAACATGAGCTAGGCGAAAAAGGTTGATGGTTCTTCTGCTCTTGCAGGGGATCTTCCTAACCCAGGGATCGAATGCATGTCTCTTAGGTCTCCTGTATTGGCAGGCAGGTTCTTTACCACTAGTGCCACCTGGGAAGCCCTGCTTAAAAGTGAGTGGAAGGGTGACATGACATTCCAAATGTTGCGTCCTGAAGATGTTGGCTAGTTTGGCCTTTGGAGTGGAGCCCTACTGGAACTTCTTCTATGGCAAAGGTGAAAGTGAGAGTTGCTCAGTCGTGTCCAAATCTTTGTGACCCCATGGACTATATGGACTATACAATCCATGGAATTCTCCAGGCCAGAATACTGGAGTGGGTAGCCTCCTCCAGGGGATTTTCCCAACCCAGGGATCAAACCCAGGTTTTGAGTGTTGCAGGCGGATTCTTTACCAGCTGAGCCAAATGGGAATGGTAGGGCCATCTTACTTTTAGATCGATGGGGCAGTCCCTTGAGGACTAGTACGATCTTAGCCTCCTAACTACCTGAAATGCCAGCTAGAGATTTATTTCCTTGGCTGAAACATTATCTAAATACTGCATGTTACCATTAATGCAGTAGGGTTGACGCATTTAACATGATTTGCTCTTTCCTGAGGGCTGCCTGGGTGTATAGGAACCCTGGGCTTATATGAAGAGGGGATCTCTGGATCCTAAAAGGGGAGACTGATGGGAAACAGAGAACATTTCACCTACTTCCTGGCCATGTCCAGAAGGACCTGTTCTCACATTGACTTCCTGGTCCATCTCAGCATTCCTGACACTGGACTGCCCAGATCATCTCCACAATTGTAGTGACTTGGGAACCGGAGCAGCTCGAGTTGGTGCAGGTTGATAGGCATCTTGTTTTCTGAATAGGAGTAGGCTGGGAACCAGCTTCCTGTGCACGGCCTGTTGTCCTGCCCCTCACTGCCTTTCTCTTCTAACCTAATGTCAGGTGGGCGTTCAGGTTTCTTTGACTTCTGGGGGTTCTTCAACCTGACACCATACTTCAGGCTTCCACCCAGCATATCCCAACTCATATAGAAACTTTCCCGCCATATGCAGAGAGGAAAACATCACAAAGGCTCAAACTCATGAGCTAGAAGAGACCTTGGCTAAATGTAATTCCATGTTCTGGCCCACCTCAGCATGCTCACTGACTCTTTAAGTCTGTAACACCCTGCTGAAATGTTTGCTTTGTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAGTCACTCAGTCGTGTCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCTTCTCTGTCCTTGGAATTCTCCAGGCAAGAATACTGGAGTGGATTGCCATTCCCTTCTCCAGAGGAACTTCCCAACTTTGTCTTTAGTCATCTATTTCTAGAAAAATCTGTCTAGAGCCTGCTGTGCACCAAGCCTTTGTGCTGGTCAGGGGGACACAAGAGTGCATAAGATGTGGCTGTTGCATTCAGGGAGTTGGTAACCTGGTACAGGAGATAGATGCACAAATAAATTATAGATGCTGTGCTCCCTACTTGGATCCATGGGCAGGCAGAGTGCTGCTGAAACCCAGAGGAAGAGGCATCTTAACTGGGGAGTGAGGGAACCCTCCTCAGAGAGGGAGCTGCTGAGCTAAATTTAGGAGAGCAGGAAGTACATAGCCAAGTGGAAAAAGGGGATAAGAGGAGAGAGTACTTCAGCCTGAAGGTTTTACATATACACACCCACATATTACATTCATAATATATACATACATCCATATATGGTGGAGTCACTTCAAATGAGAATTAACAGCAAAGTTAAATCTCTGTTCTTAAGGGAAAAAAAAGAATCTGTTTGAAAAGCACAGGCTGAGGATGAGATAGTAAGTTTAAATCTGTTGTGCCTGGTACAATTCTTGTATTTAATATACCTTTTTATTTTAAAAAATATACAAGCCATATATTTATATTATTCAACCAAAGAAAAATCTTTTTAAAAGTCTGGAGGAGAAACTGACTGTATCCATCATCATGAAAGACCCTGTGCTGGTCCTCGATATGGTACCTTCCAGAGGGATTTTCAAGGGTTATTTGGCTGAACATGGCTTGTGTCATTTGCTGACCTGAGAACTGCCTGCATGAGATGTTGACTCCACTGTATACGTTGCTGAAGGCTTGCTGTCACACCAGCAGTGGCTTGCAGGCCAGCTTTCAGAAACCTCTATGCTCAGCCATTGGGTATTTAGCTGGTTGAGAAGTCTGGGCCAGAGACAGAGATCGGGGAGTTACCATGGTAGCAATGGTAGATACGGTGATGGTTGTCAGTATGGGGCTCCCAGAAAGTGCAGGGCGAGAAAGAGAGCCCTGAAGACAGAACTCTCAGACTGTGGCATTGGAAAGGCAAGTGGAAAAGGGGACCCCTCACAGGAGCTTGAGAAGCAGTTGAAAACTAGGAGGCCTGTGTCATGGAGGGCAGGGAGGACAGGGCCAGTGTGAAGTGTTCAGCTGCGATGAAGGCTGCATAGTAACCACGCAGCTGAGGACACTTTTAGTCCTAGACTTGTACCCCAGGGCCCTCGGGGTATTGTTTATTAAACATGAGAGAAAGGACTGCATCAGCTGAAAGATCAAGGGTACCCAAAGATGAGGAAGGTGTTAGTGGGTGAGAGGGAGGGATTCAGTCAATGCCTGTACTTTTCTCCCTCCCCGAGAGGGACCAGCCTTGGAGAGCAAGAGCATGCAGCTGGGCCAGGCCTCCCTGTGAAGATGAGGAGTAGAGGGTAGCATGGGCTCAGCATGTCCGAGAAGCTAACTAGCTGTGGTTTGGGAACCATGCAGGAGAGGGGAAGGTTATTTGGGGGATGGAAAGGTGCAGGTCACTAACCGAAGGTAAGGTAGGTCTTGGAAATAGCTTCTGGCGGCAAATTGCCTTACCAGGTCCTCTCAGAAGTGGTGTGATTTGTCTTGAGGGCTCAGGCCCTTCTCATTTCAACGAACCACCTACCACCAGCTGCTTCTGTGACCCCTGAACAGCCCTGAGCATCACCCGTCCAGTGTTGAGCCCTTCCTGCCTGCTCGGTGCCTGAGGCCTTGGCTCAGATGCAGACATGGTGTGAGACTCTAGACCAGACGAGGCACTCAGTTCCTGTGGTCATGGCAGTTGCTTCTCAAAAATTATATTCTCCAGGGCTTGGAGGCCCAGGTCAAAACCTCAGACCCTGCCGTCTGACAGCCTGTGCGAGTCTTACCTCTGTCACTTTATCTCCTTGAGCCTCAGGCTGCTGCTGAGTCACTTCAGTCGTGTCTGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGATGCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTCAGTTGCCATTTCCTTCTCCAATGCGTGAAAGTGAAATCGCTCAGTCATGTCCGACCCTCAGCGACCCCATGGACTGCAGCCTTCCAGGCTCCTCCATGGGCTAGTCCATCTTAAAGTGGCACGATACCTAGCAGCAGCAAGCTGAAGACGAATGGGCGAACATGTGTAGAGCATCAGACACAGCGTCTGACACATGACTTCCTACTGGTATTAGTTGCAGGCACCCAGGCTGGGGCCTTTTGGACCATTTATCTCTTCATTTGGATGGTAAGTTTGGATCCATCTTGATGCTTTGCTCAGTGGCTGGTTTAGCGAGGAGGACCTCCAGTCTTGGCTGTTGCCCTTGGCCATTCCCTTCCAGGGCAGCAAGGGTGTGGTTCAGCCAGAATGACTCATACTCTTTGTCATCCACAG
Seq C2 exon
AAAATCCTTTGAGTTTGAGGATGCATCCAGTCTCCAGTCCCTGTACCCCTCTTCTCCCACTGAGAACGGTACTGAGAGCCAACCCAAGTTTGGATCCAAAAGCACTTTAGAAGAGAATGCCTATGAAGACATCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005356:ENSBTAT00000007048:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.855 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development