MmuINT0169161 @ mm9
Intron Retention
Gene
ENSMUSG00000032307 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q (putative) 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr9:55051508-55055336:+
Coord C1 exon
chr9:55051508-55051574
Coord A exon
chr9:55051575-55053766
Coord C2 exon
chr9:55053767-55055336
Length
2192 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
CTTTTCCCATTTTATTTCAGGCT
3' ss Score
10.06
Exon sequences
Seq C1 exon
AATCAGTATAATCTAGCACGAGCCCAACAGTCCTATAATTCCATTGTACAGATACATGAGAAAAATG
Seq A exon
GTATGTTTAATTCAATAAGTACTTATTATTTATGAAGTTACATATAGCACATTGATGTTTGCCTTGTTCATTTTTGTGTTAATTTTTTTATCAAATACTGTTAATTACAGTGAGGAGAAAAACATTTTCTATATTTGTAATCTTCTAACAAATCTTAACACTCTTTCTATCAAAAGCTGATGCCCTGAATTCCTTGACCTAAGTGCCTTTGAGTCATTGCCAAGAACTTAGGTTAATAGATAAATTCCTTTGCTCACTTGGAATATACTCTGTAAGAAAGGAGTTGTGCTAGCAGCTCTGTATAGGGGCTCTCCTGAAGCAGAGCTAATGTAAAAGGACCACGGACATCTGCTTCTGAAACATTGTCAGATGCCTTCCTACCTCATGGTCAAACCTATAACCCTACCAGGCAAAAACACTGGACTTCTGAGATAGAGCTTTACTGTGTGTGTGTCATCTGGTTCTTGATTCTCTTTTCTTGTTTTTGTTTGACTTTTTAAGACAAGACCTCATTAAGTTTCAGGCTGGCTTTGAAGTCACTCTGCAGGCAAGGCTTGAACTTGAGTCCTTTTGCTTCCGTCTTCCCAGTAGCTGGGATTATAGGCCTGTACCACCTGGCCTAGCTTGGAAGACCTACTTGCAAGTGCCATTTATGTCACTCCCTAGCTCTGTGGCTTTAAGCAAGTCCTCAGATTTATTTAGAAGAGAAATCTGTTTCTGTGTGTATTTGCCACTGCACACACTTTGTAGGTGCTGAGAGTCAAACTCAGGTTGTCTGGCTTGCCAGCAAGTACCTTCACCCATTGAGACATTTTGCCAGCCTCTGTGATCTCTTTCATCCCGAGTTTCCTCATCTGAAGGTGGCAAAGTGTCTGTTAGAAAACATGAAGAAAAAGAATAGTGCCTATGCAGAGCACTGTGTAACCAAGAGCCCTGAATAAGGAATTCATTGTAGTAGTGAAAGGGAAACTAATGCTCTTCTGTGCAGAGTGGAAGGAGCGCTACCTTAGGGCAGTACTGTAGTACATGCTCCTACCTCTGCTAGAGGTGTGTTAGTTGGGCTGGGAACTTACCATGCATGAGGCCCTAAGTTCTCAGAATGCACATGAAAAGCCAGGCGTGACAGTGGATGCCTCTGATCCCAACTGTGGGAAGCAGAGAAGGAAAGAGGCTTGGGTTTGCTGGCCAGCCAGTCTGAATCTTTGCACTGCAGGTTAAGAACCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTGAGGAAGACACGGTATGTTGCCCTCTGTGTACACACTTAATTAGGCGTATTAGTTTGTAAGTTTAGATTTGTGTCTTACACTTTATTTTATTTTAATGACAAAGACAACTTGTCACTTTTCCCGTGACTCCCTTTAGTAATAGTATTCAAAATCAAATCTTGAAACTTCAAAGGAAGGTCTTAAAATCTGAAGTTAAGCCTAGGCTTGTATAGTAGTCATTTCTAGTAAGTGCATCAGATGAGTGTGTCCTAGTGCCTGCTCTGTTCCAGGCAGGACTGAGCATCCAGGTGCCTTTCTGTGAGAGCTCACTTTTGTGGAGCCTGAGCAAGCAGACACACTTCCCCCTTTTGGTTTCTCAAACAAACCCTACAATTGGTGTTCTCAAAATGTTTATAGAAAATGTATTTGAGTGAGACAGAGAGTTTTGCATTGATGGGAGAGCAGTGGATTCGGGTCCCTATCATGAGTAACTTGATGTGTAGTCATACATTATAAGATTACTAACTCTGATGAACTGCCTCACATAGCTGGAATTTTAATGTGATGAGAGCACTTTCCCTACCAATGCTTTTGTTTGTTTGCTTTAAATTCTGGTCACCAGGATTTTGTGTGGGGGATACTTTGAGTGAGGTTTGCTTTTAAATACAAAACTGAGATGGAAGGTTAACATGTAGCTGTTAGTCCATAATGTCACTGTCAGCTAGGAGTACCATTCATACAGAGATGCTGAAAATCCAAGCATGCGTTAGTCATAAGCAGTAACCAAATCAGATATAAAATGTTGTTTAGTTAATAACTAAACAAGTGTAAGTTTCTACAGTAGGATTAAACAACACAGTTACGAATAGAGCTGGACCTGATCTTAGTAATGCCTTTTTCTAACTGCTTCAAGATTGATGTAGTTAACCTTTTCCCATTTTATTTCAG
Seq C2 exon
GCTGGTACACACCTCCAAAGGAAGATGGCTAACTACATTGACATATGTCTGGACCAATGTTGCTTTAAAGAAAATCGTTCCAACGTACAGACATAAGCTTTTGAGTGCCCGTATAACAGCAGTACCGAAGATATTAGCTAATAGATCATTTAGTGGATAATCTGTCAACTGACATCCAGTTACAGCCTTTTCATTTTGCTCACTTTAGGTATCTTGGACTGAGCAGTGGGGCCTTTACTGTATTTTTCCTGATAAGTACACACAATAGCCACTCCCTACCACCTCTTTCTTGAAAAGTGAAATCTTTTAAGCAGGGAAGTGAGCATCCGTTTACTGCAGCTGTGATTTTTACAGTAACCTTTCTATATTGAGCCTATGGGGTATGAAGATTTGCAAAATCTTGTTTGTTTAGAGCCAATAAAAGTTTAACTGATGGTCAATACTGGTTTAGAAATTTTAGGTCTTCTAAACCATAGCTTTTTCAGGTCTGAAATAATTTTATTGCCAAAATTATGACAGGAAGCCTCCTCATTAAATTGTTACACTTTTTCACGGTTGTGTGAAAGTTTGAACTAATCTAAAAGTATGATCGTAATTGTACCATATTAGCGTACAGCAAAACGAGGCAGCCACTTGTGAGCAGTAATTTCCACTGGAGCAGCAGGGTCCTAGTGGACCAAACCTGCTTCCTGTTGGTTCAGCATTTCTTGTGAGGAAGAGCCACAGTGCAGAGCCTGAAGTTCTAAAGTATGAGGTCATTTTACCTTTCCATTTATTAGCGGGGTGTTGCAATTGACGATAAACTAATAAACTTATGGAATGGTTGGCACAAAGACAGACTCTTTGAGCAAAATTATGAAAGATACCTAAATTGGAGATCCTTAAATTTTTGCTGTAGTCATGCAGTGGCTTTTACATCAGAAGACCAGTAGGAGTTCAGCCTGTGTTAATTCTTTTTTAAAATGTGACACAGATCAATGTACTTTGCATTTTTATTACCTTTCCTGAATCAATCCTCTTTGGTTGGTAATAGACTTTTTTGGATCCATGTTTGATTTGAATCTAGCTACTTAAGCACTTTTAAAAGAAACCTCGAAGCACACTCCTGCACGACCCAGTACAGAGTTAAACGGCTTTTCTTATATATTTGATTTGAGATTTTTTTTTTAAACTTTGCAAACCACATCTAGGAGATGTGGCACTTGTGCATTTTATGTGTGGTGTTAGTTTCTCTTGATTCTGTTGGTTAAGAGGGCAGAAAAGATATCTGGTATTCTTGGTCACTTGGTTACCCTAAATATATGATTGCCAGTGGCTCAGATGACAAGTGACAAGACAGAATTCTTCAACACATTATTAAGTTCCTTATGCCTAAGGCAAAATCTTGAATACATTATTGAATTCTAATTTCCTAATGGCTAGCAGATTGACAGCTGCACATTTGGCATGCTTTGGGGTTGGGTTTTTTTTTTTTTTTGATTTTATTTTTCATTGCAGATTTATTTGGCAATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTTAAAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032307-Ube2q2:NM_180600:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(12.2=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: