HsaINT0176421 @ hg19
Intron Retention
Gene
ENSG00000140367 | UBE2Q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:HGNC Symbol;Acc:19248]
Coordinates
chr15:76189336-76193388:+
Coord C1 exon
chr15:76189336-76189402
Coord A exon
chr15:76189403-76191767
Coord C2 exon
chr15:76191768-76193388
Length
2365 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTTTTTTCATTCTATTTCAGGCT
3' ss Score
11.06
Exon sequences
Seq C1 exon
AATCAATATAATCTAGCAAGAGCCCAACAATCCTATAATTCCATTGTACAGATACATGAGAAAAATG
Seq A exon
GTATGTTTAATTCAATAAGTGTTTATTGCCATTTAAGAAGTTTTAGATAATGTATTAATACTTACCATTTTATTTTTCTGTTTTTGCTTTAGTTTCTTAAAATGCTGTTACCATGGTGAAAGAAACTTGTGCTGCATACAAAATCTTTATTTATTTATTTATTTATTTTATTTTATTTTATTTTATTTGTTTTTTGAGACGGAGTCTCGCTCTGTCACCCCAGCTGGAGTGCAGTGGCACTATCTCAGCTCACTGCCAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCTTTTTTGTATTTTTAGTAGAGACCGGGTTTCCCTGTGTTAGCCAGGATGGTCTCGATCTCCTGACTTTGTGATCCGCCCGCCTCGGCCTCCCAAAGTACTGGGATTACAGGTGTAAGCCACTGCACCACAAAACCTTAACATTGTACTTCAGTCAAAATTTTTGTATCCTATACACTTGGCCTAGGTATCTCAGAGTCAGAATCAAGATTTCTTTTTTTTTTTTTTTAGTAGATTAATGAATGACTCACTTTACTTACTTGAAATATTAGGAACTGAGTTAAAGGCAACTCCTTACAGATGGAGTTCTTGTTGTTATAACTGGAGTGCAGTGGTTGTTTACAGGCGTGATCATAGTGGACTGCAGCCTCAAGTTCCTGGGCTGATGTGATCCTCCTGCCTCAGTCTCCTCAGTAGCTTGGACTGTAGGCACAAGCCACCATGCCTGTAAAGTATTCTTTACTTTGCTAGAAATGTGTCAGTTTGTGACTTAAGATTTGTGTTTTGTGCTCATTTATTTTAATGACAAAGCAAACTTGTCACTCTTTCAGTGATTGCTTACTTATGGAAATAGTATTCAAAACAAAATTTTCAAGCAGAAGAGAGAAACGATAAAATTTGAGGACAAGGCCAGGTTTTCATAATAATAATTTCTAGCACACAAAATTAGATCCAAAGAAACCTGTGTACTACTTTGATACTTTATAGATCTTGGCATATTCATACTATTCTAAAGTTTCATACTAAACAGTACTTAGTCTAATTTGCCTTTTTATAGAGAGCTTAGGTTTTTGCGGAACCTGGGACACAGATTTCTTCTTATCTTTGTTTTTATTTCTTAACCATTACAACTGGCATTCAAAAAATATTTATAGAAAATGCTGTATTTGAGAGTGTGTGGGTATGTGTAAGCTTAGCTGTGATGAAAGAGTAATAGAGTCAGAAGCAGGGGAGATGACTTCTAGGGTTTTGTTTTTTTTTAAATCTTAAAATTTTTTTGTTATTTTAAAAAAATAGATATTATACTTACTGTGTACAAAGTTTTGAAGTATACATAACTGTGGAATGACTAAATCTAGCTAATTAACCTAGGCATCACCTTACATAGTTATCATTTTTATGGTGAGACACTTTACATCCACTCTTAACATTTTTCAAGAATATAGTATATTGTTAACTATAGTCACCATGTTGTACAATAGCTCAAGATGGATTCTAGTTTGGCCTGCTACTAACTCTGATTTTAGGCATAGTCATTTAGTCATTGCACCTGCTGCGATGGCTTCCTTGTCATTGTGAAATGACGTTATGGCTCCGATAACAGTCCAAGTTCCTTGTATTCTAAATCGCCAGGATTTTGTTTGGGGAAATAAGTACTTTCCATGAGGCTTACTTTCAAGTATAGAACTGAAGTGGAATAAAACTTATTCTTTTAGTCTAATATTCCACAGTCATCTTTAGCTAGAGATGCCATTAATACAGAGCTCTTGTGTTGAAAACTCAGGTACAATTTATTCATAGAAAATAACTTTCTGTTGTGAAATAGCAAAATGCAGTGTTCCCAATCCAAGTGTAAGTTTAATTTTTAGAGTAGACTGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGGAGGTGGAGGTGGGTGGATCACCTGAGGTCATTAGTTGGAGACCAGCCTGACCAACATGGTGAAACCCTGTCTCTACTAAATACCAAAAAAAAAAAAAAAAAAAAATTAGTGGGGCATAGTGGCGCATGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGATCTGGGAGGTGGAGGTTGCAGTGAGCTGAGTTTGCGCCATTGCACTCCAGCCTAGGTAACAGAGTGAAACTCTGTCTCAAAAAATATATATATAATATATATATATATTTTTTACGGTAGATTTTAAACACCAAAATTATGAAAAGAGACTGTAGCTAACCTTATTACATGCCAGTTCTTCTAATTTATTTAAGAATTATTTTAACTTTTTTTTTTTCATTCTATTTCAG
Seq C2 exon
GCTGGTACACCCCTCCAAAGGAAGATGGCTAAATGTGTTGACTGTTGTATGTTTGGACTAATGTTGCTTTAAAGAAAATCTTTCTAACATGCAGACAAAAGCTTTGAGTGCCCCTATTACAGCAGTACCGAAGATGTTAGTTAATAGATATTTTAGTGGATAATCTGTCATCTGACATCCAGTATAAGTTACAGCCTTTGCATTTTGCTCATTTTAGATATCTTGGACTGAGCAGTGGGGCCTTTACTGTATTTTTCCTGATAAATACACATACTGGCCACTCCTTATCTCTTTTTCTTGAAAAGTGAACTTTTTAAAGCAGCCAAGTCAACATCAGGCTACTGAAGTTGAGGCTTTAGGGTAACTTTCCTATATTGAGCCCATGGGTTACAAGGATTTGCAATATATTGTTCCATTTACAGCCAATACAGGTTTAATCGATGTTCAATATTGGTTTAGGAAATTTAAGGCCTTCTAAATCATAATAGCTCTTTCATGTCTAAAACCATTTTATGATATTGCCAAAATGTGATAGGAAACCTACTCATTAAATTGTTAAACTTTTTAATGACTATGTGAAGATATGAATTGTTTCCTGAAGATAATACTCTTAATTGAGTTGTATTGTACTTCTTAGGCAAAGCAGTGTAAAACTGTATCAATTAAGGCTTGTGAGTAGTGATTTCCACTGGGGCATCAGAGTCTTGGCTGGGCTGAATCTGCTGCTTGTTGGTTCAGTGTTTCTTATGAACAAGAGCCACAGTACAGAGCTTCAAGTTATTTAAAATACTAAGTCATCTTACGTTTCCATTTTATTAACGGGATGTTGCAATCGTTTGTAAACTAATAAACTTATAAAGTGATTGGCACAAAGACTCCTTGAGCAAAAGCTGTGCAGTTAAGTACAAAAAGATACTTAATTTGGAGACTCTTACAGTAATTTTTGCCATGTCAAAACAATGGCTTTTACATTGAAAGATTAATAGAAACTCTACATATGTTAATTTTTTTATAGAACCTGACTCAAATCAAGGTACTCTCCATTTTATTGCCTTACCTGAATCAGTCCTTTTTGGTTGGTAATAGATTTTTTTATACACCCACGTTTGATTTAAAAGTAAATTCTAGTTCTTAAGCACTTTTAACAAATCCAGAAGCACATTTTTCTGCACAAACAAGTTACAAAGTTCAAAAGTGTTTCTTGTGCATTAGCTTTGAGATTCAGTTTTTAACTTTGTAAACCACATCTGAGAGACTTGTCATTTCTACATTGTGTGTGTTTAATTTCTTTTGATTCCATTTTGGTTAAGAGAGCAGTAAATAGATTTTCTGGTATTCTTGTTCACTTGATTACATTTGTATAAAGTTCTGATTGCCAGTTGCTCAGATAACAAGTGACAAGGCAGAATTCTTTAAATCAGTAAAGTTCCTTAAGCCTAAGGCTAAATCTTGAATACATTGTTGAATTCTTTAATATCCTGATGGCAAGCAGACTGATAGCTGCACATTTGGCATGCTTTGTTTAATGGATTTTATTTTTAATTGCAGATTTATTTGGCAATGTACAGTAAATTTTGTAAACTTGCATCAAGTTTATGAATAAAGAACCATTTAAAAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140367-UBE2Q2:NM_001145335:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(12.2=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)