BtaINT0156231 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004024 | UBE2Q2
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 2 (UBE2Q2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075530]
Coordinates
chr21:31708632-31711235:+
Coord C1 exon
chr21:31708632-31708698
Coord A exon
chr21:31708699-31710792
Coord C2 exon
chr21:31710793-31711235
Length
2094 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTTTTCCCATTCTTTTTCAGGCT
3' ss Score
12.25
Exon sequences
Seq C1 exon
AATCAATATAATCTAGCAAGAGCCCAGCAATCTTATAATTCCATTGTACAGATACATGAGAAAAATG
Seq A exon
GTATGTTTACTTCAATAAGTATTGATTGCCATATGTGAAATTTTACATAATGTACTGTTTACTTGTTTTGTTTTATTCTTCTGTTTTTGCTTTAATTTCTTACAAAGTATGGTTACCAGAGTGAAAAAATTTAACTTGAGGATACACATGCTTCATTTAAAATCTTTGTATCCTAAATACTTGGCCTGGGAATCTCTGAGTCAAACATTTTTGAGTAGATTGATGAATGAATCACTTTACTCACTTGAAATGTGTGATACTGGGATAGGAACTGAGTTAAAGGCAATTCTAAAGGTGGAGTTCTTGCTGTTAATACTGAGTAAGTGCAATCAGGATCATGAACAAGTTGCTCAACCATTTTCAGACCACGTAATGCTTTTTGACAATTGTGCAGATTTATTTATTCAAGTAAAAAAGTTCTAACTTCAGTCTACACTTAAAAATATTTGAATTGTAAATTAAAAAAAAATATCTTTCAAAAGTTTATTGGACTTATTTTCAATTTTTCTTGTATTCACAAGGCATGTTTGGAGTTTTTGTCTCTAAGAGTGAGATGACAAAGAAGTAGACTTGGAGTCAGGACCTATTACCAGGTGCCATTTGCATCACTCACTAGCTCTGGGGCCCTGAGCAAGTCCCATTACCTCTCAGCCTCAGTTCTCTCATCTCTAAAGTTGGTATAATGTCTGTCTTACCAAATGTGAGGAAGGAGATAAGCTATGTGTGTGTGCAGCACCTAATAACCAAGTGTGCTGATATTCAAGGTAGCTGGGGTAGTGGAATGGATGCATTTTTGTGCAGAGGAGGTTAATTGATAGGAAGTAGTTTTTCTTCAAGAGTATCTACACTAAAGTGTTCTGTAGTTAGAATGTGGTAGCTTGTGACTTCATATTTGTGTTTTGTGTGTGCTCACTTTCATTTAAGTGATAGAGCAAACGTGTCGCTTTTGCAGTGACTGCTTACTTTTGAAAGAATAGTATTCAAAACAGTTTTCAAGCTTCTGAAGAGGGAAATGATAAAATTTGAGGACAAAGCTGGGTTTTCATAATAATCATCTCTAGCACGCTAAAATAACAGACCCAGAGATGCCTATATGCTCCTTTATTAAGCACGTGGACACTCCACAAGTCTTGGTATATTTATACTGTTGGAAGGGCAGCTTCGTACCAAACAATACTTTGTCTCAGTCTCATTTGCCTTTTTAGAGAGAGCTTATCTTGTTGTTGAGCATAGAAACACGTTTTTCTTATCTCTTATTTTTTGTTAAATTAGACATTATAGTCAGCATTCAAAAATGTGTAAGTTTGTGTATAATTAGCTTTGAAGAAAGAGCAATAGATTCAGATTCAGGAGATGGATTCTGGTTAACCTGCTGCTGCTAAATCTGATCTTGGGCTGAGTCACTTAATCAGGGCACCTGCTGAGATGGCACCCTCACTGGCAAAATGACATCATTGCACTGATGACAGTCCCTCATACTCTAAAATACCAGGATTTTGTTTGGGGGACAGTTATTTTTAGTTCAGTTTCCTATATAAAACTTAGTTTGTTGTCTAATAGTCCACACTCTTCTCTTTAGGTAGAAATGCCATTAATACAGAAATCTCACCTTGAAAATTCAAGTACAGTTTATTCATAGAAAATAACTATTGTGAATATATCAGAATGTTGTGTTACCAACCCAAGTATAAGCTTAATTTTTACAAGAAGGTTTAAACAGGGAAATTACAAGTAGAGAAAATTATGGGTAGAGAAAGTATCTGCTGCTGCTGCTAAGTCACGTCAGTTGTGTCTGACTCTGTGTGACCCCGTGGATGGCACCCACCAGGCTTCTCTGTCCCTGGGATTCTCCAGGCAAGAATACTAGAGTGGGCTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGCGAAAGTGAAGTCACTCAGTCATGTCCGACTCTTAGCGACCCCATGGACTGCAGCCTCCCAGGCTCCTCCATCCATGGGATTCTCCAGGCAAAGAATACTGGAGTGGGTTGCCATTGCCTTCGCTTCTCCTAGCTGGTTTAAGAATTAAAATATGTTAACTTTTTTTTTTCCCATTCTTTTTCAG
Seq C2 exon
GCTGGTACACCCCTCCAAAGGAAGATGGCTAAATGTGTTGACTTTTGTATGCTTGGACCAGTGTTGCTTTAAAGAAAATCTTTCCAACATGCAGACACAAGCTTTGAGTGCCCCTATAACAGCAGTACCGAAGATGTTAGCTAATAGATATTTTAGTGGATAATCTGTCAACTGATCCAGTATAAGTTACAGCCTTTCCATTTTTCTCATTTTAGGTATCTTGGACTGAGCAGTGGGGCCTTTACTGTATTTTTTCTGATAAATACACATACTGGCCACTCCTAATCATCTCTTTCTTAAAGGTGAAACGTCTTAAGCAGACAAGTCAGCATCGGGTTACTGAAGTTATGACTTGAGGGCAAATTTCCCATTTTTGAGCTCGTGTGTTATGAGGATTTACAATATATTGTTCCATTAAAGCCAATAAAGTTTAATCAATGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004024:ENSBTAT00000005257:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(12.2=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]