RnoINT0159289 @ rn6
Intron Retention
Gene
ENSRNOG00000014529 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr8:59764507-59766889:+
Coord C1 exon
chr8:59764507-59764573
Coord A exon
chr8:59764574-59766857
Coord C2 exon
chr8:59766858-59766889
Length
2284 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
CTTTTTCCATTTTATTGCAGGCT
3' ss Score
9.7
Exon sequences
Seq C1 exon
AATCAGTATAATCTAGCACGAGCCCAGCAATCCTATAATTCCATTGTACAGATACATGAGAAAAATG
Seq A exon
GTATGTTTAATTCACTAAGTACTTATTAATATTTATGAAGTTATATATAACATGTTGATGTTTTCTTTGTTCTTTTTTGTGTTTTTGTCCTAATTTTTTTTATCAAATACTGTTAATTACAGTGAGGGGAAAACATTTTCTATATTCATAATCTTGGAACAAATCTTAACACTGCTTCTATCAAAAGCTGATGCCCTGAATTCCTTGACTTGAGCACCTTTGAGTCACTGCCAAGAATTTAGGTTAATAGATAAATTCCTTTGCTCACTTGAAATATACTCTGTAAGTAAAGAAATTGTGTTAGCAACTCTATATAGAGCTCTCACTGTAGCAGAGCTAATGTAACCTGATCAGGACCATCTGCTTCTGAAACATCTTCAGATTCCTACTCGGTTCATTTCCTACCACAGGGTCAAACCTAGAACCCTACCAGGCAAAATCACACACTGTGTGTGTGCATCATCTGCCTTGCACTGGTTCTTGACTTTCTCTTCCTTTTTTTTCTTTTTTCTTTTTGTTTGTTTTACTTTTTAAGACAAGATCTCACTGAGTGTCCCAGGCTGGCTTTGAGATCACTCTGTAGTTCAGGCAAGGCCTGAACTTGGAGTCCTTGTGGTTCAGTCTTCCGAGTAGCTGGGATCATAGGCCTGCCTCACCTAAGACCTATTTGCCAAGTGTCATTTATGTCACTCCCTAGAAATATGGCTTTGAAGGAGTCCTCAGATTTCTTTAGAAGAGAAATTTGTTTCTGTGTGTATGTGTTTGCCACTGCACATGTGGGTGCTGAGAGTCAGACTCAGGTTGTCTGGCTTGGTGGCGAGTACCTTTACCCACTGAGCCGTTTGCCAGCCTCTGGTTTCTTTCATCCCTAGTTTGTTCACCTGAAGTTGGGAAAGTGTCTCTTAGAAAACGTAAAGAAAAAGAATAGTGCCTATGCAGAGCACTTTGTAACTAAGTGCCCTGAATAAGGAATTCATTGTAGTAGTGGAAGGGAAACTAATACTCTTTCATACAGAGTAGAAGGGTAGGTACCTTAGGATAAGTACTGTAGTAAATGGTCTTGACTCTGCTATACATGTGTTAGTTGGGCTGGGAAATTACCATGCATGAGGCCCTAAGTTTGTTCTCAGAATGCACATGAAAAGCCAAGTGTGGCAGTGGATGTTTCTGATCCCATCTGTGGGGAGGCAGAGAAGGAAAGAGTCTTGGGTTTGCTGGCCAGCCAGACTGAATCATTGAACTCCAGGTTGAGAATCTGTCTCAAAACAACAACAATAAAAAAAAGTGATTTGAGGAAGACCCAGGATGTTGATCTCTGTGTACACACTTACATAGGTGTGTTAGTTTGTAAGTTTGGATTTGCGTCTTGCATTCTATTTTAATGACAAAGCCAACTTGTCACTTTTTCCATGATTCCTTTTAGTAATAGTATTCAAAACCAAATCTTGAAACTTCAAAGGAAGGTCTTAAAATATGAGGTCAAGCCCAGGCTTTTGTAGCAGTCATTTCTGGAAAATACATCAGATGAGGTTGTTCCAATGTCTGCTATACTGGGCATAACTGAGCATCCACTTGCCTTTCTGTGAGAGCTTACACTTGTGTGGAGCCTGAGCCAACAGTTACGTTTCCCCCTTTTTATTTCTTAAACCCTACAATTGGTGTTCACAAGATGCTTATAGAAAATATATTTGGGAGAGACAGAGAAAGAGCCTTGCATTGATGGAGGAGCAGTGGATTCATAATCAGAAGAGAGCAAGTCTAATTTCAAAGTTTTTTTTATCTTTGTACTTGTTTTAAATTGAGAAAATTGTGTACTTATCATGAGTAACTTGATGTTTAGTCATACATTGAGGTTACTAACTATGTGATGGACCACCTCACATAGCTGGAATTTTAATGTGATGAGAGCACTTTCCCTACCAATGTTTTTGTTTGTTTGTTTTAAATTCTGATCACCAGGACTTTGTTTGGGGGATATTTTGAGTGAGGTTTGCTGTTAAATACAAAACTGAGATGGAAGGTTAGCATGGGGATGTTAGTCCATACTGAGACTGTCAGCCAGGAGTCCATTCATACAGAGATGCTGACATCCAGGTATGCTTTAGTCATAAGCAGTAACCAAGTCAGATAGCAGAATGCTGGGTTAGTCACTAAACTGCAAGTTAAATTTCTACTGTAGGGTTAAACAGCACAGTTATGAGCAGAGACTGAGTCTGATCTTAGTAATGCCTTTTACTAACTGCTTCAAGATTGATGTAGTTAACCTTTTTCCATTTTATTGCAG
Seq C2 exon
GCTGGTACACACCTCCAAAGGAAGATGGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014529:ENSRNOT00000019539:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(12.3=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]