MmuINT0169529 @ mm9
Intron Retention
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69790798-69791597:+
Coord C1 exon
chr2:69790798-69790926
Coord A exon
chr2:69790927-69791544
Coord C2 exon
chr2:69791545-69791597
Length
618 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTTGCTTGTGTCTTTTAAAGGTC
3' ss Score
11.47
Exon sequences
Seq C1 exon
GCTAGTCTTGCTGAAATTCACAGTAACATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCCATGACCTATGTCCAGTCTCATTTCTGTAACTCCATGATTGACCCAGACATTTACTTACTACAG
Seq A exon
GTGAGCCAGCTGCTGCGCTTTGGGAGTGTCTCGGTGTGCATGGTATCTTAATTTCAGAGGTGACAGTGGGCATGGGAGACGTCAGCTCACGAGAAAGAATGTAGTACTTCTATTTCCCAGGGGAAGGGTGCTGTAGCATATGGGCCACGGCCATATGGTTTTAGTCAAATTTTAGTCAGGAAGCAGAAACAGGAGCCAGGAGAAAGCCCCGGCTAGCACCCGGCTAACACTCGTTTTGAGAGTTTCTGTAGGAAAGGCAAGAGAGAACAGAGGAAGAACTCTAAATAGTTCTGTCAGGCTTTGTGGCATAGGGGCTGTACCTCATTGTGCTATGCTCAGCCTTAGATTCATTAAGGGCTGGGGAAATGCTATAATTGTGTGGCAGTTAGGTAAAGTGGGTGGATGCTTGTGTGGGGCTTTGTTCCTAAGTAAGTTTTCTATTATTTGGAATTCACTCTCCACAGTTATTATTAATATCTTTTACTAGTCTTTGAGTCTTTCTTTTTGTGTGGCTCATGGCTTGTGGAAGTAGAAGAAGATACAGAAAAATCTAAAAGCAAGACTAATACAAAGCAAAGCTGAATGTGAGAGATAAAACTTTGCTTGTGTCTTTTAAAG
Seq C2 exon
GTCTGTGCTTCTAGACTTGACCCAGACTACTTTATATCATCTGTCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-Ubr3:NM_001081548:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: