RnoINT0159636 @ rn6
Intron Retention
Gene
ENSRNOG00000008616 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:RGD Symbol;Acc:1565257]
Coordinates
chr3:56193157-56193936:+
Coord C1 exon
chr3:56193157-56193285
Coord A exon
chr3:56193286-56193883
Coord C2 exon
chr3:56193884-56193936
Length
598 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCCCTTGTGTCTTTTAAAGGTC
3' ss Score
12.18
Exon sequences
Seq C1 exon
GCTAGTCTTGCTGAAATTCACAGTAACATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCTATGACCTATGTCCAGTCTCATTTCTGTAACTCCATGATTGATCCAGATATTTACTTATTACAG
Seq A exon
GTGAGCCAGATGGAGAACCAGGTGTGCTTTGGGAGTGCCTTGATGTGCCTGGTATCTTAATCTGCAGAGGTGACAGTGGTGATGGGAGAAGTTAGTTCATTGAGAAAGAATATATTAAATTTCCCAGAGGAAGGATGCTGTACCAAATGGGCCACAAGGGAAGCATCAGGTTAGTCAGGAGGCAGAAACAGGAGCCAGGAGAAACCCTAGGCAAGCATCATCTTGAGAGTTTATGTAGGAAATGCAAGACAGAGTGGAGGAAGGACTGTGAATTGTTCTGGCAGGCTTTGTAGCCTAGGCTCTGTACCTCCTTGTGCTATCTATGCTCAGCCTTAGCTTCACCGAGGGCTTGGGAAGTACTGTATCCCTTTGTCAGTTAGAAGTGGCTGGGTGCTTGGTTTGGGCTGTGTCCCTGAGCAAGGTCTCTCTTGTGTGGGAATCCGCTCCACACAGCTCTTTCACTAGTCTCTGAGTCTTTCTCTGTTTTGTGTGGCTCATGGCTTGTTGAAGTAGGAAAAGATACAGAAAATCTAAGAGCATGACTAATATAAAGCAAAACTGAATGAGAGAAGTAAAGCTTCCCTTGTGTCTTTTAAAG
Seq C2 exon
GTCTGTGCTTCTAGACTTGACCCAGATTACTTTATATCATCTGTCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008616:ENSRNOT00000011380:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]