HsaINT0176808 @ hg19
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:30467]
Coordinates
chr2:170782129-170783254:+
Coord C1 exon
chr2:170782129-170782257
Coord A exon
chr2:170782258-170783201
Coord C2 exon
chr2:170783202-170783254
Length
944 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CATTTTGTTTTCTTTTAAAGGTT
3' ss Score
11.36
Exon sequences
Seq C1 exon
GCAAGTCTTGCAGAAATCCACAGCAATATGTGGGTAAGAAATGGTCTGCAAATCAAAGGACAAGCCATGACGTATGTCCAGTCTCATTTCTGTAATTCCATGATTGATCCTGACATTTACCTGTTACAG
Seq A exon
GTAAGCCAGCTAGATAATGCAGATATACTTTAGAAGTGTCTCATTTGTACCCAAGGGATTTTAATTTATAGAGGTGACTGCGTGATGACATGGAGAGGCCAATGCCATTGAAAGAATAATTTTTTACTTACATTTCCCAGGAGAAGAGGCATACCACCCAACACAAGGCTACAAGGAAAGCACCAGATTTTGGTCAAGAGGCAGAAAGGAGTGAGGGGAGAGCCTAGGCCAGAGCCTTTATTGGGGTTTCTGCAGGAAAGGCAAGGAAAGGCAAGGCAGGATTGGCTAATTTGAATAATTCCAGCAGGCTTTGAGGCATAGGGGCTGTATCTGGCTCTGCGGTACCTGGCCCTGGGTTGATTTAGGGGAGGGGAAATACTGGGTTGATGTGTGAGAGTTAGATAAAGACAGTGGTTGGCTTGCATGACAGGCATTTTCCCAAGTAAGTTGTTTAGTATGTTCAGGAATTAACTGGCTCTGGGAGGGACTATCTGTCTTCAGGTCTGTAATGCCCCTCAAGATGTCAAAACATCATAATATACAGAAAATAAAAATCATAGCCAGGCGTGGTGGCTCATGCCTGTTATCCCAGCACTCTGGGAGGCCAAGGCAGGCAGATCACTTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAACACGTCGAAACCCTGTCTCTACTAAAAATACAAAAATTAGGCAGGTGTGGTGGCACACACCTGTAAATCCCAGCTACTCGGGAGACTGGGGGATGAGAATTGCTTGAGCCTGGGAGGCAGAGGTGGAGGTTGCAGTGAGCTGAGGTTGCACCAGCTTGGGTGAGAGTGAGACTCTGTCTCAAAAACAAAAAACAAAAAACAAAAAACAAAAAAAAGTATAGAAAAACATGATTAATAGAAGAAGGAAAACTGAATATTGAGAAATAAAGCATTTTGTTTTCTTTTAAAG
Seq C2 exon
GTTTGTGCTTCTAGACTTGACCCAGATTATTTTATTTCATCCGTCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357-UBR3:NM_172070:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)