MmuINT0179493 @ mm10
Intron Retention
Gene
ENSMUSG00000078779 | Zfp59
Description
zinc finger protein 59 [Source:MGI Symbol;Acc:MGI:99206]
Coordinates
chr7:27846404-27856438:+
Coord C1 exon
chr7:27846404-27846502
Coord A exon
chr7:27846503-27853383
Coord C2 exon
chr7:27853384-27856438
Length
6881 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCTTTCTCCTTTTCTTTCAGATT
3' ss Score
12.06
Exon sequences
Seq C1 exon
TGGGAAGTTGCATTTCCAAGCCAGATCTGATCGTCTTACTAGAGCAGGAGAAAGAGCCCTGGATGGCTGTGAATGAAGAAACAGGCAGGCCGAGCCCAG
Seq A exon
GTAAGTAAGAGTGAGGTGAGCCTGCAGCCCTGCCAGGCACAGATGTGGTCAGAGAGGCTCCACAGAGCTGGCACTGGATGTGGCAAACTTCCTTCAAAGCCCCAGGGCCTGTGGGAAACAAGCCTGAGGCCTGGGAAGGAAGTCAGGGTCACAGCAGAGCCTGCCAAAGGGTCTCTGTTTCAAGAATCACTTTAAGTTGTTCTTATTTTCTTCCCTCCTACTGTAGCAGGTGCGCTCTCTCTCTAACCTTTAAAAGTATTTCATTATTGGTTGTGTGTGCACACACGTGTGCAGGTATCCAAAGAGGCCGTGAGAAAGGGTCAGCTCCCTTAGGCTGGAGTTATAGGTGTCTCAGCCAGTTGAGTTTGTTGTTGAGGAGTCTCTGTTGAGATCTGTATCCTATTTTCTAATCGAGTTATTTGTTTTGTTGGTATATAAATGTTTTAGTTCTGTATATGTTTTAGATATTAGGCCTGTGTTGTATGTGTAGTTGTTAATTTTTTTTCTTTCTGTAGGCTGCTGCTTTGTCCAAATGACAGTGTCCTGTGCTATGCAAAAGCTTTTCAGTTTCACAACGCCCCATTTATTAATTCTTGTTTTCCATGCCTGTGTCTACGATGCCATGTTCAGAGCTTGTTTTCCTGTGGCAATGAGTTCAAGTCTATTCCCTACTTTCTCTTCTATCAGGCTGAGTGTATCTGGTTTCGTGTTGAGATGTTTGATCCATTTGGAGTAAAGTTTTGTTCAGAGTGATACTTGTGGATCTATTTGTACCTTTGTACACACAGCTGTACTTTTTGACTGGCCCTATTTGTTGAACATGCTGTCTTTTCCAGTGTGTATTTCTGGCTTTTTTTTTTTTTAAAGCAACTTTCAGGTTTCTATCAGTATGTAGGTTTATGTCTTCAATTCATTTCTCTTGCTCAATGTATCTGTTTCTGTGCCAGTACTATCCTGTGGGGAAAAAGAAGAACCCACAAAGTAGCAAAGGCCAGCCACAATTATGTCATTCTTTCATCTTTAATTTTGTTACTTTGAATTTCCTTTTTCCACTTTTAGATAATTGGGCTAAGGGCTGTCAGTCTTTCTGAGTTTCTCAGAGCCAGCTCTGTGTCTCACTGATACTTCATATGTTTTTTCCTTTGTTTCTCTTTTATTGATTTCAGTCCTGAGTTTAATTACTTCTTACACTCTATTCCTTTTGGGTGTAATTTCATCTTTTTGTTCTAGAGCTTTTTGTTCTGGTGTTGTTAGAGTGAGATTTCTCCATTTGTTTTAAGTGAAGGTACATGGTGCTATGAGCTTGCTTCTTAGAATCACCTTCATCATGTTCCATAAGTTTGGATGTGTTGTGTCTTCATTTTCATTCAATTCTAGAAAGTCTTTAGTTTCTCTTTTAATCTCTGTCTTCACCCAATTTTTTTTGTTGTCTTTTAAAATTTTTTTTATTACATTTACTTATTTTTTTCCACTTTACATCTCAATATCAGCCCCTCCCCTCCCAGTATCCCTCACACAGATCCCTCTCCCCATCCCTCCCTCCCCTTCTCTTTGACAAGGGGGCCCCCCCTCTAGGTATAGTCTCCCACTGAGGCCAGACAAGGTGGCTCAGTTAGGGGAATGGGATCCAAAGGCTGGCAACAAATTCAGGGACATCCTCCACTCCTGTTCTTGGGGACCTTCATGAAGACCAAGCTGCACATCTACTTCATATGTGCAGGAGGCCTTGATTCAGCCCACGCGCACTCCTTGGTTGTTGGTGGTTCAGTCTCTGGGAGTCCTCAAGGGTCTAGGTTAGTTGACTCTGTTGGTCTTCCAGTGGAATCCTTGTCCCCTTGGTCCCTCAGGCCCCCACCCCTACTCTTACACAAGACTCCTAGAGCTCCATCTAATGATTGGTTGTGCGTCTCTGCATCTCTTTCCATTGGCTGCTGGGTAGAGCCTCTCAGAGGACAGCTATGCTAGGCTCCTGTCTGCAAGCACAACAGAATATAACTAATAGTGTCAGGGGTTGGTTCTTGCCCATGGGATGGGTCTCAATTTGGGGCAGTCTTGGTTTGGCCATACCCTCCATCCCTGCTCTATAATTGTCCTTGTATATCTTGTAGGTAGGACACATTTTGGGTCAAAGGTTTTGTGCATGGGTTTCTGTCCTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGAGTTATTGCAGAAAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCAGCCGTGGAGTATTTTCTTAGTTGGTGATCAAAGGGAGAGGGCCCATTGTAGGTGGTGCCATCTCTGGGCTGGTAGTCCTGGGTTCTATAAGAAAGCAAGCTGAGCAAGCCAGGGGAAACAAGACAGTGAGAAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTAGTGATGAACAGCAATGTGGAAATGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTCAACTATGTTCATGATGTTGTCATGATGTTTGTGCAGGAATAGAAACCCTACTAAGACATGTTGTTCTCTCTTCACTGAGAGTCCTGCCTGGCTATAGGAAGTGGTCACTTCGGACCCATATCCTTCATTGCTAGGAGTCTTAGCTAGAGCTGCTCCCATAGACTCCTGGGACCTTCCCCCATCCCACGTCTCTGGCAAGTCCCTCCACCACCACCAATTTCCGTTCTTTCTCCCCTGTTCTCCCTACATCTGACCTCCTCCATCCCCATCCTCTCGCCCATCTAGTTCCCTCCACCCATCCTCCTCCAATATCTATTTTATTTTTCCTTCTGAGAAAGATTCAGCCATCCTCCCTTAGGCCCTTCTTGTAATTTGGCTTCTTTGGGTCTGTTGATTATGGCATGGTTATCTTGTACTTTATGGCTAATATTCACTTATAAGTAAGTTTCTATCATACATGTTCTTTTGGGTCTGGATTTTCCCACCCAGGATGATATTTTCTAGTTCCATCTATTTCCCTGCAAAATGTATGTTGCCCTTGTTTTTAATAGCTGAGTAATCTTCCACCGTGTAAATGAACCACATTTCCTTTATCCATTCTTCAGTTGACGGACATCTAGGTTGTTTCCAGTTTCTGGCTATTATGACTAAAGCTGCTATGAGCATAGCTGAGCAAATGTCCTTGTGCTAATTGTGGAGCATCTGTCAGGTTATATGTCCAGGAGTAGTATAGCTGGGTTTTGAGGCACAGCTATTCCGAATTTTCTAAGAAATTGCCAAATTGATTTCCAGAATGGTTGTACAAGTTTACATTCCCACCAGCAGTGGAGGAGTGTTTCCCTTGCTCCAAAAGTTTGCCAGCGTGTGCTGTCCCTTGAGTTTTTGATCTTAGCCATTCTGATGGATGTAAGGTGGAATCTCAGAGTCGTTTTGACTTGCATTTTGCTGATGACTAAGAATGTTGAACATTTCTTTACGTGCTTCTTGGCCATTTAAGATTCCTCTTGAGAATTGTCTGTTTAGTTCTGTATCCCATTTTTTAAAATTGGGTTATTTGGTTTGTTGGTACCTAACTTCTTGATTATTTATATATTTTGGATATTAGCCCTCTGTCAGATGTAGTATTGGTGAAGATCTTTTCCTAATCTGTAGTATGTCCTTTTTTTTTTTTTTTTTTTTTTTCCTATTGATGGTGTCCTTTGACTTACTTTTCAGTTTCATGAGGTCCCATTTCTTAATTTTTGATCTTTGGGACTGAGTCATTGGTTCAGGAAATTGTCTCCTTTAGCAACATTTTGAAGGCTGTTCCCCACTTTCTGTTCTATTAGATTTAGTGTATCTGATTTTACATTGAGGTCTTTGATCCATTTGAACTTGAATTTTATGCAGGTGATAAATATGGATCTATTTTCACTCTTCTATATTGCAGACATCCAGTTAGACCAACAGCATTTGCTGAAGATGCTCTCCCTTTTCCATTGTATGGTTTTGTCTTCTTTGTCAAAAATCAAGTGTCTGTAGGTGTGTGCGTTTATTTCTGGGTCTTCAATTTGTTTCCATTGATCAACCTGTCTGTTTCTATACCAATACCATGAAGTTTTTATGATTATTGGTAATGGAAAATTTTGCTGGGAATAGCATCTGTGGTCTTCCAGACTCTGTACAGTATCTGCCCATTCCCTTATGACTTTTCAAGCCTCCAGGAAGCAGCCATGCATTATCCCAGTAAGCTGCCTTTATTCTTGATCTGTGTCCTTTGCAGCTTTTCATATTCTTGCATGTCTTGTATGATTAGTGTTTTGGTTATTATGTGCTGACGGGACAGGACCTTCGTTTCTTCAGTCTACGGTTCTTGTTCCTTAACAGGCATGTTATTCTTTAGATTAGGGGAGTTTTCTGTGGTTCTGTTGAAAATATTTCCTTGATTTTTGACCCGAGTTTCTTCTCCTTCCTCTATACTTATTCCTAGATTTTTGTCTTTCCATTGTATACATGATTTCCTGGAAAGTTTGGGCAGGGTTCGGGGTTTTTGTTTGTTTGTTGTTGTTTTTGCATTTCCATGAGGTATTCATTTCTCCTGTTGTGTCTACAGTGCCCCAGATTCTCTCTACTGTCTCTTGTACTGTGTTGGGGAGGTTTGCTTCTGAGGTTCCTGTTCGAGTTTCTAAGTTTTTCAATTTAAAGTTGTATCTCAGTTTTGGTTTTCTCTATTGACTCTAATTCTGCTTTCAGGTCTTGAGCTATTTCATTCATTTCCTTCCACTGTTTGTGTTTTCATAGATTCCATTTCTTCCTCTTTAATCTTCTCTTCTATGTATGAAAGCGATTTTAATGTTTTTCTAGTGCTTCAGCTGTGTTGCAATGCTCAAGGTCTTTGGAGGTAGGGTTGCTTGGCTCTAGTGTACACATACTGCCCTAACTTTTATTGTGTTTTCATGCTGATATTTATGCATGTGCCATTGGGAAGAGTATAATTCTAAGTGCTGATGTCTGGTCTTGTCTTTGTTGGGTATCGTTTTTCCCTCCACCCCTCAGGATTTAGTTCAAAAACCTTTAATAAAGGATGTATGTTAGGATAAAGTGGCAAGTTGTGGGTAACTTTGGCAGGCTTATGCCAAGGTATGTGGCTAAGAAATTATACCACACAATTGATATAGTGTAAGAGCTTCATTGGGGGTTGGGGTTATAGTGTATTTATCATGTGCTTTTGACCCTTTAAAGGATTTCCAGTTGCTAATGAACTGGCCTTTTAAGAATTCTTAGTTGTTAGAACTGCTTGGCCCTATGACCTTCAGTGTAGGATATAAAGCAGAGGCTGAGAATGGAGATTGAGCAGAGTGAGAGACAAAGGCAACTGGGGCAGAAGATATTGTTAGGAGACAGTTGAGTCAGGAGAAGCTGGGCTGAGCAGATGGGCTAGAACAGTTGTTATAGGTTGGAGCTGCGAGCATTAGGAAAACTGGAAGAGCGGCTGTTTACACTGTTGGGGAACTGAGGGAGGAAGAGTTGGGAGGAACTTTTAAAGGGATTGGGCTGGAAATATGCAGAAATGGGTGGGAAAGAAGTTAGATTGAGGGATCCTACTCAGTGTCTCCCCTCTATCCTTATTTCTCTCTTATCTAGTGTTAGTGGGTGAAACGATGGGGATGAAAGGTGGGAAAAAGAAGAACCCACAAAGTAGCAATGACCAGCTACATGGCTGAAATTGAAAGGCTATCTCCAGTGGGGACATGGAGGTGGGGGGGGAAAACAAAGTGACAGAGAAAATGAACAGATTGAGAGAAAGGCAGAATGGGAGAGTGAGCTGGGGTGGCTGGGGCCTTTTATGGGCCACACCTGGAACACCTGGTACCTGTGTGTGATGACATAAGTTACTGCTACTAGGCCCCCAAGGACAGGCTGGTGGGAATGTCTAATTGCTGTGTATTTCAAGTAGTATACAAATAAATACGTAAGATTATTTCAGTACAGTTATAATGTGGTAAAGCGGACCTATAGAGAGACTTTTGGCTACTGTGTGGGTTTCTTTTTCTACAACCCTTCTCCACCATTATTCCATCCTTCCAACTGCCAAACACTAGGAGAGAAAGAATGCTAGAGGGGAAAAGGAGTGTTGATATCCTTAGACATCAGATAGCCTGCTGATTAGGGCTTCGAGTTTCTTGGAGCAACTTTGAGCTTGGCTGCTGGGATATCCAGTTTCTTCTTCTCTCTGTGTGTGCAACCACTTGACAGACCACAAGATCAGTGACCGGCAGCAGGAGCAGAGCCTCCCTCAGCACCTCTGGGTACTCGAGCATTCATATCCCCTCTAAAGATTCCCCAGAATTTTAAGCATCATAGACTTGAAAAAACTATCTATAGCTGGCATAATCAAGCCCCTGCCATAGCACTAGGCAAATCATAGTCTGTTGCTGTGGGCAATCTGAAGTAGTCCCATATCCTATACCCGGGATTGGAAACATATGCTGGGAGTCGTGACATATACCTTTAATTATATACCAGCAGATGGGAGACAGAGCCAGGTGGATCTGTTGTGAGTTTGAGGCTGACCTGATCTACAAAACAACTCCCTGACAACCAGGGCTGTTACAAAGGAAACAAACAAAAACATAGTCTCATAAAATTTCTGTGTTTTTAAGGAAACCAGAGTTCTCACCACAGACATGTTGTCCCATTTCCAACCTGTTCTACTGTAAAGAGTATCTTCTTACATAAACTTTCCTTACTGCTGCTATCCGTGCTCCCATACAGCTTCTCAGAGATTACTTTAAAGTGTTTTCATTCATTTAATGGCTCTTATGTTACAGGAAAATGTGTGTATGTGTGTTACCAGAAAATAAAAGTATTCTTGCTTTCTCCTTTTCTTTCAG
Seq C2 exon
ATTTGGAGGCAGATTATGATGCTGAAAATATATCCCCCCAAAATCGTATTTATAATAGAAAATTTTCCAAACAGAGCATAAAGCAATTAAGTAGAACTTTTGACCCCAAGGGCTCCTGGTTTAGTAATGGCCCCAACTATAGTACATTCCATGGACTACGGGATTGTCAGAGTGATGCTGGCCAACAGATTACTAACAAGGAAGGAGTGCCTCCTCACACCTGCCAGACTCTTGCTCACAATACAGAAAAACCATATGAATGTAAAGAGTGTGGGAAGTGCTTTGGTTGCAGGTCAACTCTTACTCAGCATCAGAGTGTTCACACTGGAGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAGGCCTTCAGACTCCCCCAACAGCTCACAAGGCATCAGAAGTGTCACAGTGGTGAGAAGCCTTTCAGTCATAATGAAGGCAGACAGGCTTTTCAACATCCCAACCTACTCAAGTACCCTAAAGCCATTCATACAGGTGCCAAAGCATTTGCATGCAGGGAATGTGGGAAGTCCTTCAACCGTGTCTCCAGCCTTGTTGAACATGGGCTTATTCATGCTGATGTGAAACCATATGAATGTAATGAGTGTGGGAAAGCCTTTAAACGACACAGAAGTTTTGTGCGCCATCAGAAAATCCATTCTGGTGAGAGACCCTTTCAGTGTAAGGATTGTGGGAAGGGCTTCATTGTTCTGGCTCACCTCACTCGGCACCAGAGCAGTCATAGTGAAGAGAAGCCATTTGAATGTGAGGAATGTGGCAAGAAATTTAGAACTGCCAGACACCTTGTTAAGCACCAGCGCATTCATAGCGGCGAGAAACCCTTTGAATGCAATGTATGTGGGAGTGCTTTCCGGCTTCAACTATACCTTTCTGAGCATCAGAAAACTCACATGGAAGAGAAATACTTGGAATGCAATGTGTGTGGGAAGGCTTTTCGGCTTCAGGTATACCTTTCTGAGCATCTGAAAACTCACACTGAAGAGAATCCTTTCAAGTGTAAGCTCTGTGGGTCAGCCTTCCCAAATAAGTACCAACTTAATAAGCATCTCACAGTTCACACTGATGGGAAACCCTATCAGTGCAAGGAATGTGGCAAATGCTTTCGTCAAAGGTCAAAACTAACGGAACATGAGAGTATTCACACTGGCAAGAAACCCTTCCAGTGTGAAGAATGTGGGAAGTTCTTTAGACTTAACACACTTCTCATTCATCATCAGAAGTCTCACAGTGGTGAGAGACCTTTTGAATGTAAAGAATGCGGAAAGGCTTTCCTTCTTCCCAGTCAACTTAATAGCCATAAAATTGTTCATACAAGTAAAAGACCCTTTGAATGCAAGGTATGTGGGAAGTCCTTCAAGCGTGAATCCAATCTCATTCAACATGGCGCTGTTCATGCTGGTGTGAAATCATATGAATGCAGTGAGTGTGGGAAAGGTTTTATTCACCGCTCAAGCCTGTTCCACCATCGGAAAATTCATTCTGATGAGAAACCATTTAAGTGTCAGGAGTGTGGAAAGGCCTTCGTTGTTCTGGCGTATCTCATTCAGCATCAGAGCATCCACACTGGAGAGAAACCATTTGAATGTGAGCTGTGTGGGTCAGCCTTCAGATGTAGATCCCAACTCAATAAACATCTGAGAATTCATACTGATGTGAAACTCTTTCAGTGTGTGGAAGATTGAACAGACATTGTTCGTGGAACAGAGCTTAGGGAGTCCACACTGGTGAGAAGCTCGTTCAGTGTAATGGATATGGGGAAGCTCTTTGATATCTTTACAAAATTCTTAGACATGTTAGAATTCATACTGGCAAGAATCATCATGAATATAAAGAATGTGGGAAGTACTTTATGTGTGGTGGAGACCTTAAAGTACATCCAAGAATTCACACTGTAAGAAACATTACCACTGTTAAGAATGTAGGAAGACCTTTAGTTGAATATGAAACTTGTTTTGACATCCTAAATATAATAGTAATAAGAAGTCTTATGATGTAAGGAGTATGGAAAGGCCTACAGTAATTCTAAGTTCCCTGTATATCAGAGAAGTTCTACTGGTGAGAAAGCCTATGAATAAAAGTAAGGTGGGAACATGTTTAGACTTCGTGCAGCCTTCATGCATAGTGGCAAATTCATACAGGTAGGACACCCTATCAGTATAAAGAATGTGCAAAGACCTCCAAGTGGAGCTGGGGCCTTCTTCAACATAAAAAAATGTTTGCTTGTGTCGAACACTATGAATGCAAGGAATGTGGGAATATTTACAGAATTAGCTCAGCTCTTAAAGCTCATCAGAGGGTCCATATAAGTCTCGAGATGCTGTGACTGTGAGGACTCGGTAAGAAAGCTTTGATTGTAAATGGTGACCTTACACAACATCAGAAAATCCATAATCACCAGGAGTCATGTGCATGTGAAAGAGGACAAGCCACTGTATGAAAATCTTCCTGAACATCAGAGAACTCACATTGGGAAGACCATGACGTCACATAAAATGAGAACTTTAATCTGCCCTGGGATTTGGTGAACATAAGAGTATTCATATACGGTTGATGCCAAGAAATCCTTTGGAACGAGAATTTGGGAAGTCGGTTCAGAGAAGATACTCTGTTGAAAATGTCTCTTATCCTCAGAAATCTAGGAAGTCTCCTGACAACCTTTTCCCAGCATTCTAACAGTCTAGATTGACTGTCCCAGGATGCTGCCAAACGTGACTGGAAACAAAGTTGTTCTATCCTCCCTACAGGGTCAGGACACAGAATACTGATAGTTAAACTGTGAGGGGCCCTACATGAAGAACCTGACTCTGCCATTGTTCCATTGGCAGCAACAACAAAGCCCTGGTGGCTCTAATGTCTAGGAGAAAAAGCTGGATGCCTACAATTCAGAGTCCTTTGCTTTAAGGATTGAAGCTAGGTGTGGTGACTTTTGCCTGTAATTCCAGAATATGAGAGGATGAGGTAGGAGAATTACCAGGCATTTAAGGCAAGCCCGGGTTTCATGTATGAAATCCAGGATATCTTGGAAAAGAAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078779:ENSMUST00000205701:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF051298=Elf1=WD(100=11.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types