MmuINT0179805 @ mm9
Intron Retention
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102038698-102039704:+
Coord C1 exon
chr15:102038698-102039307
Coord A exon
chr15:102039308-102039585
Coord C2 exon
chr15:102039586-102039704
Length
278 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTTTTTGCCCTTGGACCAGGTG
3' ss Score
7.17
Exon sequences
Seq C1 exon
CAAAGGGCCACCGAAAAGACAGTGATAAATCCCGCAACCGCAAAGAGGATGACAGCTTGGCTGAGGCCTCTCATTCAAAAAAGACTGTTAAAAAGGCAGGTAATGGGGAAGCCCCAGACTCGTGCAGTTTGGTAATGGGGATCTTCCCTGGTGAATCTGAGGCCACTCTGACAGTTGCCGTCCACTCTTGCTGAACATTCTTGGTGCAGGTGGGAAGCGTGGCTTATGTTCTTGGAGCGGGGCAGGTGAACCCCAGCTCACTCACGCTGTTTTGTTGGCTGTGGCAAGACAGCTGGTTCATCGACCCCATCTTCCTCCCTTCACGGCTCTTAGCTCAAGGGGTGTGACAGGTGACAGCACCGCCTTCCACAGTATCAGAAAGGTTCTCAGGTTCTCGGTCCGGCAGCTGTAATTGGTCCCAGAGTAGAATCGTCTCTGGGAAGAGGACAGAGACACCCACATGACATGCCTGATTGTTGCCCCCAGGTGGTGGTAGTGGAACAAAATGGCTCTTTTCAAGTAAAGATTCCCAAAAATTTTATTTGTGAACACTGCTTTGGAGCCTTTCGGAGCAGTTACCACCTCAAGAGGCACGTCCTAATCCACACTG
Seq A exon
GTGAGTCTGCTGTGTTCCGCACGTCCACACTGGTGAGTCTCTGCTCTGTTCAGACTCGAGTTCAGATGGGAGAAGAATCTGAAGCCTGTATTCCCACTGGCTTTGTTTTCCAGGAGAGTATTAGACGTGGAGGCAGAGAGGTTGCATGGCTCTGTTTGGTGTCACTGAGACCAGCAGTTTTATGTGTTTATGGTCACTAGGTGTCTGGACGACAGCTGAGATGTGTAGTCCCTGCTGTCAGTTCTCTTGGTGCTCACTTCTTTTTGCCCTTGGACCAG
Seq C2 exon
GTGAGAAACCATTTGAGTGTGATGTCTGTGATATGCGTTTCATCCAGAAGTACCATCTCGAACGCCACAAGCGGGTACACAGTGGCGAAAAGCCTTACCAGTGTGAACGATGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897-Zfp740:NM_153194:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127602=Zn_Tnp_IS1595=PU(71.1=65.3),PF134651=zf-H2C2_2=PU(38.5=20.4),PF0172213=BolA=PU(36.2=34.7)
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=PD(26.7=30.0),PF134651=zf-H2C2_2=PD(57.7=37.5),PF0172213=BolA=PD(61.7=72.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTCTCAGGTTCTCGGTCC
R:
TTGTGGCGTTCGAGATGGTAC
Band lengths:
300-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: