BtaINT0166028 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046481 | ZNF740
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MZB2]
Coordinates
chr5:26980357-26980895:-
Coord C1 exon
chr5:26980772-26980895
Coord A exon
chr5:26980476-26980771
Coord C2 exon
chr5:26980357-26980475
Length
296 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
CTTCTCTCTGATTGGGCCAGGTG
3' ss Score
7.34
Exon sequences
Seq C1 exon
GTGGTGGTAGTGGAACAAAATGGTTCTTTTCAAGTAAAGATTCCCAAAAATTTTGTTTGTGAACACTGCTTTGGAGCCTTTAGGAGCAGTTATCACCTCAAGAGGCACATCCTTATTCATACCG
Seq A exon
GTAAGTCTCTTGCTCACATTCAGAGGGGGAGCATAGTCCATAGTTTGTGTTACATTTGTATGTAGCTCCTGTTGGGTTTATTTTAAGGAGTAAGTATTAGAAGTAGGGGAAGAAGGTAAGTGAATGAGGCAGAAGAGATTGTATGTATCTGGTGTTGCTGAGACCAGCAGCTTTGGGGACCTTTCCCCATTAGCTGTTCACACGTTACTAAAAGATAAAGATTTCTGGGAAAATACCTGGAGTGAGGTCCCTGCCATGTATACCTCCTGATGCTCCCTTCTCTCTGATTGGGCCAG
Seq C2 exon
GTGAGAAGCCATTTGAGTGTGACATATGTGATATGCGTTTCATCCAGAAGTACCACCTGGAGCGTCACAAGCGTGTACACAGTGGGGAAAAGCCCTACCAGTGTGAACGGTGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046481:ENSBTAT00000065154:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154431=DUF4630=PD(20.0=50.0),PF127602=Zn_Tnp_IS1595=PU(71.1=76.2),PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF127602=Zn_Tnp_IS1595=PD(26.7=30.0),PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTAGTGGAACAAAATGGT
R:
GACACCGTTCACACTGGTAGG
Band lengths:
237-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]