RnoINT0169279 @ rn6
Intron Retention
Gene
ENSRNOG00000012192 | Znf740
Description
zinc finger protein 740 [Source:RGD Symbol;Acc:1589052]
Coordinates
chr7:143814867-143815388:+
Coord C1 exon
chr7:143814867-143814990
Coord A exon
chr7:143814991-143815269
Coord C2 exon
chr7:143815270-143815388
Length
279 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CTTTTTTGCCCCTGGGCCAGGTG
3' ss Score
6.85
Exon sequences
Seq C1 exon
GTGGTGGTAGTGGAACAAAATGGCTCTTTTCAAGTAAAGATCCCCAAAAATTTTATTTGTGAACACTGCTTTGGAGCCTTTCGGAGCAGTTATCACCTCAAGAGGCACGTCCTTATCCACACGG
Seq A exon
GTGAGTCTGCCGTGTTCAACACGTCCTTGTTCACTCTGGTGAGTCCCTGCTCTATTCAGACTGGCGTTCAGACGGGAGAGGAATCTGAATCTTGTCTTCCCGCTGGCTTTGTTTTGCAGGAGAATGTTAGGCATGGAGGTTGCATGGCTCTGTGTTTGGTGTCACTGAGACCAGCACCCTTACGTGTTTATGGTCACTAGGTGTCTGGACGACAACTGGAATGTATAGTCCCTGCTGTAATTTCTCTTGGTGCTCACTTCTTTTTTGCCCCTGGGCCAG
Seq C2 exon
GTGAGAAACCGTTTGAGTGTGACGTATGTGATATGCGTTTCATCCAGAAGTACCATCTTGAACGCCACAAGCGGGTACACAGTGGCGAAAAGCCTTACCAGTGTGAACGATGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012192:ENSRNOT00000016240:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTAGTGGAACAAAATGGC
R:
ACATCGTTCACACTGGTAAGGC
Band lengths:
236-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]