MmuINT0179805 @ mm10
Intron Retention
Gene
ENSMUSG00000046897 | Zfp740
Description
zinc finger protein 740 [Source:MGI Symbol;Acc:MGI:1915994]
Coordinates
chr15:102208753-102209273:+
Coord C1 exon
chr15:102208753-102208876
Coord A exon
chr15:102208877-102209154
Coord C2 exon
chr15:102209155-102209273
Length
278 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTTTTTGCCCTTGGACCAGGTG
3' ss Score
7.17
Exon sequences
Seq C1 exon
GTGGTGGTAGTGGAACAAAATGGCTCTTTTCAAGTAAAGATTCCCAAAAATTTTATTTGTGAACACTGCTTTGGAGCCTTTCGGAGCAGTTACCACCTCAAGAGGCACGTCCTAATCCACACTG
Seq A exon
GTGAGTCTGCTGTGTTCCGCACGTCCACACTGGTGAGTCTCTGCTCTGTTCAGACTCGAGTTCAGATGGGAGAAGAATCTGAAGCCTGTATTCCCACTGGCTTTGTTTTCCAGGAGAGTATTAGACGTGGAGGCAGAGAGGTTGCATGGCTCTGTTTGGTGTCACTGAGACCAGCAGTTTTATGTGTTTATGGTCACTAGGTGTCTGGACGACAGCTGAGATGTGTAGTCCCTGCTGTCAGTTCTCTTGGTGCTCACTTCTTTTTGCCCTTGGACCAG
Seq C2 exon
GTGAGAAACCATTTGAGTGTGATGTCTGTGATATGCGTTTCATCCAGAAGTACCATCTCGAACGCCACAAGCGGGTACACAGTGGCGAAAAGCCTTACCAGTGTGAACGATGTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046897:ENSMUST00000119800:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=23.8)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=37.5),PF134651=zf-H2C2_2=PU(80.8=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTAGTGGAACAAAATGGC
R:
ACATCGTTCACACTGGTAAGGC
Band lengths:
236-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types