MmuINT0180534 @ mm10
Intron Retention
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126911110-126915327:-
Coord C1 exon
chr4:126915072-126915327
Coord A exon
chr4:126911285-126915071
Coord C2 exon
chr4:126911110-126911284
Length
3787 bp
Sequences
Splice sites
5' ss Seq
AAAGTATAG
5' ss Score
-1.06
3' ss Seq
CATCTCTGTTATCATTTTAGAGA
3' ss Score
9.01
Exon sequences
Seq C1 exon
CTCCACAGTTGACTACTGGCTTTCAGCCTTCTCTGGCATCACCTGGCATGAATAAAATGCTTCCTTCAGTTCCAGCCACAGCTGTTCGAGTTTCTTGCTCTGGTTGTAAAAAAATCCTCCAGAAGGGGCAGACTGCTTATCAGAGGAAAGGGTCTACTCAGCTTTTCTGCTCTACCCTGTGCCTCACGGGATACACAGTTCCACCTGCCCGCCCACCGCCTCCCCTCACCAAGAAGACTTGTTCAAGTTGCTCAAA
Seq A exon
GTATAGCAGAGTTCTAAATTATCTTTTGTTTCTTTATTTCTTTTAATGCTTGTTTCTTAACCTGTGTATTATTACTTGCATTTCAACTTTGCTGTAGGTTTTTCTTGTAAAACAAAACAACAGTTAAAAAAAAAAAAAAACATTTAGTGCCCCATGTTGCTGCTTTCCATTTTTCTGGGAAGTACTCAATCTCTTTTAGCTCAACAAGTGATTTTTAAACCAATTCCTTCATATTTTTTAGTTAAGATTTCTTACATTCTACTAGTCTAGCACTGAAGCACTTTTCCAATAATTTTTCTGTGTAGCACACTGGCTGTTCTGGAATTCACTGAGTTACACCAGCCTGGCCTTGAGCTCATCTAGATGAGCCTGGGTCTGCCTCCCGCGTGCTGGGTTTAAAGGTGTGCGCCACGGCCATCCTGCTCTGCATTGTGTATGTACCATGTGTGAGCTTGGTGCCTTCAGGGGCCAGGAGTGGTAATGCATACTGTTAATTCCAACACTTGAGAAGCAGAGGCAGGTGGATCTTTTGAGTAGGAGGTCTACAGAGTGAGTTCCAGGACTGCCAGGGCTACACAGAGAAACCTTCTTGAGGAAAACAAAAAGAACTAAACCAAAGGAACCCCCCACCCACCGTCCCAATTCTGAGTTTATGTAAAGTATTGTTATAGCGAAAGTGACAACTGAGCAACTTTAGCCATTTCACCATGAAGATATACTTTAAAGCATTATATAAGTAAATATACAGTATTACCTGTCAGTGTTAAACAAAAATAATGTAGCAGTATATACTTTGTTGGGTTTACAACTATTAGTCTAATGGATACCTAATATTATTTATTGAATTATTTAATGACCTTAAATTTAGAGAAAAGCTATTAGTATTATAGCTACTAGTATTATGACTTAGGTAAGGTGACTATTAAATTGATTTTCCCGTACTTTTTTGGCTAAATTAATGTACCTAAAGCAGAGTTCTTTATTTCTACTGTTTTGTGATTTTAAAAATGAATACTTAGCTGTATTGTCTAAGCTTTTATATTTTAGTGCATGCACTATTAGGTTACTTTATGATTTGAGTTAGATTGAAAACTATGATTATTTTAGCTTTCTAGCTTGCTGTTTTATTGTGAAAAAGTTTGGATGGTTGATGTAATAGCTTTACTTGTTCATCTTTAACCATCTTAAGAATCAGGGATTTCTGAGACACCACTGATACTTTTTTCCCCATGAGAACCATAGATACATCTATAAAGATTTTTCATTTTTATCAATATAAGCTCACATAATTGTACAGAAATGTATCACCTTTCATGTATATATTCATAATAGTATGCTGATAGGGGAGGTCATGTGCGTACTCTGTATGCACATGTATATAGGTATATGTACATACATGCACATGAATATGAAAGACAGAGGATAACCTTATCCTCAGGAATATCAGGAATGCTATATGCCTTCTTTAAGACTAGACATCACGGGGGCTGGTGAGATGGCTCAGTTGGTAAGAGTACCCGACTGCTCTTCCAAAAGTCCAGAGTTCAAATCCCAGCGACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACTTCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATGAATAAATCTTAAAAAAAAAGACTAGACATCACTAATTCATTGACTTGGAGTTTAGCACTTACTCTAGACTGACTGGGATTTGCCTTAGGGATCCTTCTGGCTCTCTTAGGTATCCTCCAGTTTCAAGGATTCTCCTGTCTGGTCTTTTCTAGCATTGGTATTACAAGTGCTTATCACCATACCTGGTTGTCTTTATTTGGGTTCTAGGAATTGAACATAGGTCCTTATGCTGTCAAGGTTATACTTTACTGGCTGAACTGTATCCCAGCTACACCTTTTGGATGGATGGATATATATATATATGTGTGTGTGTATATATATATATATATATACATACACATATATATGTGTGTGTATATGTATATATATGCATATATGTGCACATATATGCACACATATATACATACACACATGTATGTATGTGTATTCGTATATATTACATTTTTGCATATGTATTAATTTTATATACACTTCTTATATTTTTTTTGTCCTTTGGTGGTTATTGCTGAGTTATCTGAAGACACATTATTTTTCTATACATGTCAGAAATAAGTGTTTAAGGGGCTGGAATGGTGACTCAGCAGTTAAGAGTACTTCTTGCTCTTTCAGAGGCCTTTAGTTCCGAGGACCCACATCATGCATCATAACCATTTGTAACTTCAGTTCCAGAGAATCCAATGCCTTCTAGTCTCCTCAGTACCAGGCATGCATATAGAGCATATATGTACCCAGAAGCAGATGTTCTTATAAATAAATCTTTAAAAGGATACCTAAAATTCAATGTTTGTGTTTTTCCCTCATCCATCAGGATTTCCAGTTTCACCTGTTCTCACTATTTTATCCCCTCATTCATTTATTCTTGTGTCCATTTTTTCTCTTTACTTTTCCGTTTCCTCTTTCTGTTACTTGGTAGCACTGTTTATTTACTTGCTTGTCTCCCCCTCCTCCTTCTTTTTTGGCTCTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGAAGATGAAGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGAGCCACCACTGCCCGGTTGGGATTCATTCTTCTTTGTCTTCATTACTGATGCTTACATATTAAATTTTTTAGATGTGGACATCTAGATTTTTTTATAGCGATGCTTAAATATGTATCACACAGGACTAGGTAAATAGCTTATTTATAAAAATGATTGCCTTTTGAGCACGTAAGTTTAGATGCTCAGTACTGGGAAGGCAAAGAGTAGTAGATCCCTGTAGGTCAGTGGGGCACCTACTGTTTACTCTTTGAATTCCAGGTTCAGGGAGACCCTGTCTTGGAGGTTTGTAAGATGATTCAGTGAGTAAAGACTTAGTACCTGAATTCATTCCTGGAAGCCACAAGTTGTCGTCTGACATGCAGACATACAGACATACAAGATAAATAAACATGAAAGAGAAAAAAAGACAGAAAGAACAACACACCCCCCCCCACTGCAATACACACCACAAATGTATACGTGTACACTCACAAATTTAAACAGCTGTACACATGTACACCAACAAATTTAAGTTGCAATCTCTCCTGGGGGCTGGAGAGATTTAGTGGTTGAGAGCATTGATTAGTCTTTCAGAGGACCCTTGTGGTAGCTTATAGCCATCTAACTCCACTTCCAGGTGATTCAACTCCTTCTTCTGTTCCTTGACTGCACCAGAAACCCAAGTGGTGCACGGGCATTCATGTATGCAAAGTACTCATACACATAAAATTACAAATGTTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCCAAAATTACAAATGTTTTAATTTTAAAAAGTTGCAATGCCCTTTATTATCAGCCTAGTTTTATTTGGTTCCTTTAATATACCAAGAGGGTGGTAAATGTAATATCCTGTGACTAATTTCATCTCTGTTATCATTTTAG
Seq C2 exon
AGACATTTTAAATCCAAAGGATGTGATCAGTGCCCAGTTTGAAAATAGTACCACCAGTAAGGATTTTTGCAGTCAATCATGCTTGTCAACATATGAACTGAAAAAAAAGCCCATTGTTACCATAAACACAAATAGCATTTCAACCAAATGCAGCATGTGCCAGAAGAACGCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446:ENSMUST00000106108:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=47.7),PF064679=zf-FCS=PU(28.9=15.1)
A:
NA
C2:
PF064679=zf-FCS=PD(68.9=52.5),PF064679=zf-FCS=PU(40.0=27.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types