MmuINT1033146 @ mm10
Intron Retention
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105275837-105279225:+
Coord C1 exon
chr11:105275837-105275948
Coord A exon
chr11:105275949-105279117
Coord C2 exon
chr11:105279118-105279225
Length
3169 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATTCTGTTTTTATGTGACAGCCT
3' ss Score
6.1
Exon sequences
Seq C1 exon
GTATTTACCACCAGAGTGTTTTGTGGTTGGGAAAGAGCCACCAAAGATCTCAAATAAAGTCGATGTTTGGTCAGTGGGTGTGATCTTCTACCAGTGTCTTTATGGGAGGAAG
Seq A exon
GTGAGGAAGAAGGCAGTGGAGCAGCCTGGGGCCATACCCACCACCTCACTGGGATTCTTCTTTGCAGTTAATCATTGGAATCCTGAAAGTAGTGGTTTAAAGAAAATACAGACTTCTCAGTAAATGCTTTGTGTATACCTACAAATTCCAGGCTGAAGAGCACCTACTGAATTCTCCCAAGCCATCAGAGACATGCATGTTGCAATCTCAAATATAAGACATGTTTTAATTCTGATGTGAATTCATGTAAAATAGGGTGTTGTATTTTTTTAAGATTTTGCTTTGTAGCTGTGGTTGGCCTGTACTATATACGTAGCAGAGGCTGACCTCAGACTCAAGGCAATCCCTGTGCCTCAACCTCTTGAATGCTGGTATGACATCACGTCTGTCTTGAAATCCTTTAGTGGCATGAACAATCTGCCAAAAAAAATTTCCCAAGCTTTCCAATAGGATCTGAAACTTAACCCCTAGATTTTATTTGTAACCACCTCATTAGATAAAAGCTGTTGTTAATAAAAAAAACATACTGTGTGCTCGTGTGTGCTTGTGAAGCCTAGAAGTTGACCTCAGGTTTGTCATTAATTCTCCATCTATTTTTTGAGTAAGGTCTTTCACTGAACATGTCTGAGCCAGCCTGGCTAGCTAGCAAGTCCCCACAATCTCCCTATGTTGGGACTACAGGCACATATGCTGCATCTGGCTTTTTTGTGGGTGCTGGGGATCAAAATCAGGTCCTCATTTTTGTATAGTAAGTAAGCACTATACTGTTTTATTTGTTAATTTTGTTTTGTTGAGACTGGTTCTCACTATGTAGCCCTGGCTGGTTTGGAGTTGTCTATGTTTAGATCAGGCCGGCCTTAAACTTACAGAGATTGTCCTACCTCTGCCTCATGAGCACTGGGATTATTAAAGGAGTGAATCACCATACCTGGCAAAGATTTATTATTTATTTATATGTATGTATCTCTGAGTACATGAGTGTGTGTGCCCATGGAAGCTGGAAGAGGGTCTCAGATACCGTCCTTGTTTGCTTCCTGTTGCTGTGATGAGCACCAGACAAAAGCAAAAGCCTGTCTCAGGAGGTGGTATTAGCTCATGCATCAGGATCATTGAGAGAAATCAAGGCAGAAACCATGGAGGGATGCTGCTTACTGATTTGGTCTTTGTGGCTTGTTCGGCTTGCTTGCTTATATCAGCCAGGACCACCTACTCAGTGACACTACTCACAGAGGGCTTAGCCTTTCCACAAAAAAGCCAGGACCACCTACTCAGTGACACTACTCACAGAGGGCTTAGCCTTTCCACAAAAATCCTGAATCAGGAAAATCCCCCTTGTCTTGCCTATAGGCATTTGATGGATACAATCAAATAAGGTTTCCAGATGACTCTAGCTTGTGTTACGGTGACAAAACTAACCAGCACAGATACCTTAGTGCTAGAATTACAAGAGGTCGGGGGATGATAGACTTGGGTGTTGGGAACTGAACTGGGGTCCTCTACAAAAAAGGCAAATGATCTTAGCTGCTGAGCCATCTCTCCAGCTACCCCTCCCCTCCTTTCTTATGCTGAGAATGAGAAGGTGGTGTCAGAAAGTATCCCTTAGCCAGGTGTGGTAGTTCATACCTATAATACCAGTATTTTGGGGTCTGAGACTAGAGGATCCAAAGAATTCATGGGAAACCTTTAGTCCCAGCACTTGTGAGGCAGAGGCAGGCAGATCTCTTGAGTTCAAGGCCAATCTGGTTTAAAAGGGAGTTCAGGACTGCCAGGGCTATAAGAAAATCATCTCAAGAAAACAAAACAAAACCCAGAAAAACCATCTCAGAAAAGTAAGGGCTAGAGATGTAGTTCAGTGGTACAGTATGTAACATCTACAAAGCCCTGGGTTCCATTCCCATGCCCACACAAACAGTAATTCTTTTCTGCTTCTAATAAAGGTCTTATATCATTAGAACAAACAATGATGGTATTTTCCCTCTGAGCATGTCTTTTATACACCCACACGTGTATAGTATATAGTACATATTAGGGTCCTGTTGTGTATTCATATTCCTTCTGCCTTTAGTGTTTAGGCAGAAAGCAAATGGGAGTTTTGTAGGCCCTGTGAACTCTTAATATTTTTATTAGGTTCCCAGTGCGAAGTCTTTAATGTGCATAATGCCTTCCTCTTTAGCCTCTTGTCCTTGGACCAGCCTTTACCCGACAACTATGCAGAGCTAGTAGAGCTTAATTATTTTGTGTTCTGTTTACGAATGTTGAATTGTTACTGATACTAGCGATAGAGGCTATGTAGAATTATTTCAGATCTGTTAGGGACACTGAGCTTTTAACCTGGTTTTTAAAGTTTTTGTTTTTGTTTTAAGAAAACTGCAGCTTGAGGCACAGTTAAAACCCCTAGGTGTTCCCAGGCCTTTGTTGTTATCTGCCAGGTTTTGTTTCTTTCGAGGTGGGATCTTTGTTACATAGTCCAAACTGGCCTAGGGCTCACTGTGTAGCCTTTGCTGGCTTTGAAATCACAGTGACTCTCTTGTGTCAGCCCCCTAAGTGCTGAGGTTACAGTTATGAGTCCCCATTCCCATCCTTCATACTGGATGCCAGTAAAACATTTTCTCTTCTAACCTTTTTTTTTAGATTTATTTTATGTTTTTGAGTGTTTTGTTTTGTTTTGTTTTTTCCTGCATGTACATATGTGCACTACATGAGAGCCTGGTACCTACTGAGCTCAGAAATTGTGCACTGGGTCCCCTGAAGCTGGAGTTACAGATGGATGTGAACCACCATGTAGTTTCTGAGAGTTGAACTCAGGTCCTCTGCAAGAACAATCAGTATTCTCCATTTCTGAGCCATCTCTGCAGCCCCAGCCACACCCATGATTTATTTAGCTTTCCATCCTATTTTGTGTACAAATTAGGTTGGCTAGTGGCACATAAATATGTATAGTCACCAAAGGAGTGAGTCAGGGTGCAAGAGACAGCGGGCTTCTTTCCGACTCTTTGTGAGTAAAGCTGGAGATAGGAGAGAGGGTTTCTACTTCTCTGTCCTGCCTTGAGTGGCCTGTGCGCTCTGGCCTCCCTGTTAAGTGTCGCAGGTGAGAGGTAGAGGAGACTTCTGTGGTACTGAATTGTGTGACCAGAGGCCAACCTTAGTTTATTCTGTTTTTATGTGACAG
Seq C2 exon
CCTTTTGGCCATAACCAGTCCCAGCAAGATATTCTACAAGAGAATACTATTCTTAAGGCTACTGAAGTACAGTTCCCGCCAAAGCCAGTAGTAACACCTGAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694:ENSMUST00000106939:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(23.3=69.6)
A:
NA
C2:
PF0006920=Pkinase=FE(12.5=100)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types