RnoINT0151407 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93501158-93504363:+
Coord C1 exon
chr10:93501158-93501269
Coord A exon
chr10:93501270-93504255
Coord C2 exon
chr10:93504256-93504363
Length
2986 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATTCTGTTTTTGTATGACAGCCT
3' ss Score
6.47
Exon sequences
Seq C1 exon
GTATTTGCCACCAGAGTGTTTTGTGGTTGGGAAAGAGCCACCAAAGATCTCAAATAAAGTCGATGTCTGGTCAGTGGGTGTGATCTTCTACCAGTGTCTGTATGGGAGGAAG
Seq A exon
GTGAGGAAGAAGGAGGTGCAGCAGCCTGGCCCACACCCTCCTCAGTGTGGGTTCTCCTTTGCAGTTAGTCATTGGAATCCTAGAAGGAGTGGTTTAAAGAACATACAGACTTCTCAGTACATGCTTTGTGTATTCCTACAAATTCCTGCCTGAAGAGCACCTACTGCACTCCCACGCCATCAGGGACATGCATGTTGCAATTCTCAAATATAAGACATGTTTTCATTCTGATGTGAATTCATGTAAAATAGGGTGTTTTTTTTTTTTTTTTAAGATCTTGTTTTATAGCTGTGTTTGGCCTGTACTATATAGCGCAGACTGACCTCAGACTCAAGGTTCCCCTTACCATAACCTCTTGAAACTGGTACCATAGCACATCTGTCTTGAAATCATTTAGTAACTTGAACAATCTGCCCAAAAAACTTTCCCAAGCTTTCCAATAGGATCTGAAACATTCCCTAGATTTTATTTGTAACCACTTCATTAGATAAAAGCTGTTGTTAATAAAAAAAAAAGAAAAGAAAATACTGTGCTTTGTGTGTGCTTGTGAAGCTTAAAAGTTGACCTCAGGTTTGACATTAATTCTCCATCTTATTTTTGAGTAAGGTCTTTCACTGAACTTGACTGGGCTAGACTAGCTAGCCAGCAGGTCCCCACATCTCCCCCCTGCTGGGACTACAGGCCCATACTGCTACATCCAGCCTTTTTATCTGGAGGCTGGGAGTCAAAATCAGGTCCTTGTTTTTGTATAGTAAGTAAGCACTTTATCCACCGAGCCACCTCCCCAGGCCCCTCATACTGTTTTGTTTGTTGCTTTTGTTTTGTCGAGACTGGTTCTCCCTATGTAGCCCTGGCAGGTTTGGAGTTGTCTATGTTTAGATCAGGCTGGCCTCAAACTTCCAGAGATTGTCCTACCTCTCTCTGCCTCAAGAGCACTGGGATTAAAGGAGTGAATCACCATATCTGGCAAAGATTTATTATTTATGTATGTGTGTGTATCTCTGAGTACGTGAGTGTGTGTGCCCATGGAAACTGAAAGAGGGTAGCAGATACTGTCCTTGTTTGCTTTCTCATGCTGTGATAAGCACCATAACAAAGAAAAGCCTATTTTGAGAGGTATCGCTTGGCCTATCTGGATCATAGTCTACCATTGAGAGAAGTCAAGGCAGAAACCCATGGAGGAATGCTGCTTACTGGTTTGTTCTTTGTGACTTGCTCAGCTTGCTTGCTGATATCAGCCAGGACCACCTACCCAGAGTGACACTGCTCACAGTGGGCTTGGCCTGTGCACATGAATCTTGAATCCGGAAAATGCCCCATTGACTTGCCTATGGCATTCTGATGGATACATTCAACTAATGTCTCCCGATGACTCTGGCTTGTGTTAGGTTGACAGAACGAACCAGCACAGACACCTGAGTGCTAGAGTTACAGAGGTTGGGAGATGACTGACTTGGATGTTGGGAACTGAACTGGGGTTCACTACAAAAGAGGCAAATACGTTTAGCTACCGAGCCATCCAGCCACCTCTCTCCTCCTCTTGTGTGCTGAGAAGGTGGTGTCAGAAAGCGTTCCTCAGCCAGGTGGGAAACCTTTAGGCCCAGCTCTTGGGAGGCAGAGGCAGGCAGAGCTCTTGACTTGAAGGCCAGTCTGGTTTACAAAGGGAGTTCCAGGACAGCCAGGGCTATAAAGAGAAAATCCGTCATAAGAAAACAAACAAACAAATAAATCACAGAAAACCAAGGGCTAAGGTTGTAGTTCAGTGGTACAGTACGTAGCTAACATCTACAGAGCCCTGGGTTCCATTCCCACACCCACACAAACAGTATTTCCTGTCTGTTTCTAGTAAAGGTGTTACATCATTAAGACAAAAAAATGATGGTGCTTCTCCTTGTGAGCACATCTGTACTCCCACATGTGTATAGCACACACATGCTACGGCCTGTTGTGTATTCATATTCCTTCTGCCTTCAGTATGTGTGTGCTCTAGTGTTTAGTTAGGCTGAACTTGGGCATAAAGCAGATGGGGATTTTGTAGGCCCTGTGAACTCTTAATATTTTTATTAGATTCCCAGTGCAGTTTTAATGTGGGTAATGCCTTCCTCTTTGGCCTCTTGGTCTTGAGCCCACCTCTACAAGACAGAACTATGCAGGAGTAGAGCTTAGTTACTTGTGTACTGTTTAATGTTGAATTGTTACTAATACTAGTGATAGAGGTTTTGTTGCATTATTTCAGATCTGTAAGCAGCGCTGACCTTTTAGCCTGTTTTTAAACTTTTTTTTTTCTTGAGGTAGGATCTTTGTTATATAGTCCAAACTGGCCTAGAGCTCACTGTGCAGCCTTTGTGGGCTGTGCTGAGATTACAGTTGTGAGCCACCATTCCTATCCCTCATACTGGGTGTGGGAAAACATTTTCTCTTGTAACCTGCTTTTCTCTTTTTTAGATTTATTTTGTTTTTGAGTGTTTTTTTTCCTACATGTGCATATGTCCACTACATGAGAGCCTGGTACCTACTGAGCTCAGAATTGTACACAGGATCCCCTGAAGCTGGAATTACAGATAGATGTGACCCACTATGGGGCTCTGAGAGTTGAACTCAGGTCTTCTGCAAGAACAGCCAGTGTTCTCCATCTCTGAGCCATCTCTGCAGCCCCACCCACGACTTATTTATTTTTCCATCCTTTTTGTGTACATATTAGGTTGGCTAGTGGCACATAAATATGTATAGTCACCAAAGATGTGAGTCAGAGTTCAAGAGACAACTGGTTTCTTCCTGATTTGTTCCTTACCGTGAGCAAAGCTAGAGACAGGAGAGACTGCTTCTACCTCTTTGTTCTCCCTTGAGTGGCCTTAAAGCTCTGGGCCTCCTCATTAAGTGTGAGAGGTGAGAGTTAAAGGAGGCCATCCCCAATGTGGAGACTCTTCTGTGGTACTGAATTGTGTAACCAGAAGCCAACCTACTTTATTCTGTTTTTGTATGACAG
Seq C2 exon
CCTTTTGGTCATAACCAGTCCCAGCAAGATATTCTACAAGAGAATACTATTCTTAAAGCTACTGAAGTACAGTTCCCGCCCAAGCCAGTAGTAACACCTGAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.2=100)
A:
NA
C2:
PF0006920=Pkinase=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]