RnoALTA0033364-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159887008-159887667:-
Coord C1 exon
chrX:159887553-159887667
Coord A exon
chrX:159887041-159887133
Coord C2 exon
chrX:159887008-159887040
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TACACCAATTTTTTTTGTAGCTA
3' ss Score
6.16
Exon sequences
Seq C1 exon
CTCCTGTGTCACGTGGAAGAGATGGTTATGGAGGCCCACCACGAAGAGAGCCCCTGCCTTCTCGTAGAGATGTTTATTTGTCCCCGAGAGATGATGGATATTCCACTAAAGACAG
Seq A exon
CTATTCAAGCAGAGACTATCCAAGTTCTCGAGATACACGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAG
Seq C2 exon
TTCACGAGATGACTATCCATCAAGAGGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF080816=RBM1CTR=PD(80.0=92.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGTGTCACGTGGAAGAG
R:
GCCTCTTGATGGATAGTCATCTCG
Band lengths:
143-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]