HsaALTA1033992-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000147274 | RBMX
Description
RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:HGNC:9910]
Coordinates
chrX:136875258-136876655:-
Coord C1 exon
chrX:136876503-136876655
Coord A exon
chrX:136875291-136875383
Coord C2 exon
chrX:136875258-136875290
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
CCAAAACTTTTGCTTTGTAGCTA
3' ss Score
5.4
Exon sequences
Seq C1 exon
ATGACGGTGGATATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCAGTAAAAAGAGGACCACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAGTAGCAGTGGAATGGGAGGAAGAG
Seq A exon
CTATTCAAGCAGAGATTACCCAAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGAGATTATACTTACCGTGATTATGGTCATTCCAG
Seq C2 exon
TTCACGTGATGACTATCCATCAAGAGGATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147274-13-14,13-13,13-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.799
Domain overlap (PFAM):
C1:
PF080816=RBM1CTR=PU(17.8=15.4)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains