BtaALTA0024753-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013308 | RBMX
Description
Bos taurus RNA binding motif protein, X-linked (RBMX), mRNA. [Source:RefSeq mRNA;Acc:NM_001172039]
Coordinates
chrX:20459015-20459349:-
Coord C1 exon
chrX:20459235-20459349
Coord A exon
chrX:20459132-20459140
Coord C2 exon
chrX:20459015-20459131
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AGTTACTTTTGTTTCTTTAGCTA
3' ss Score
6.49
Exon sequences
Seq C1 exon
CTCCTGTATCACGTGGAAGAGATAGTTATGGAGGTCCACCTCGAAGGGAGCCCTTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGATATTCTACTAAAGACAG
Seq A exon
CTATTCAAG
Seq C2 exon
CAGAGATTACCCAAGTTCTCGTGATACAAGAGATTATGCACCACCACCAAGAGATTATACTTACCGTGATTATGGTCATTCCAGTTCACGTGATGACTATCCATCAAGAGGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013308-8-9,8-8,8-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF080816=RBM1CTR=PD(80.0=92.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCCCAAGAGATGATGGA
R:
AATCTCTTGGTGGTGGTGCAT
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development