GgaALTA0003352-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006457 | RBMX
Description
heterogeneous nuclear ribonucleoprotein G [Source:RefSeq peptide;Acc:NP_001073196]
Coordinates
chr4:4391347-4391687:-
Coord C1 exon
chr4:4391573-4391687
Coord A exon
NA
Coord C2 exon
chr4:4391347-4391472
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
TCAGTTCTTGTTCGTTGTAGTTA
3' ss Score
5.94
Exon sequences
Seq C1 exon
CTCCTGTGTCACGTGGAAGAGACAGTTACGGTGGTCCTCCACGCAGAGAACCAATGCCGTCACGAAGAGATGTCTACATGTCTCCAAGAGATGATGGCTATAGCACTAAAGATGG
Seq A exon
NA
Seq C2 exon
TTACTCGAGCAGAGATTACCCCAGTTCCAGGGACACACGGGACTATGCACCACCTCCGCGTGACTATGCGTATCGTGATTATGGTCATTCCAGTTCACGTGATGAATACCCCTCCAGGGGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457-21-18,21-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF080816=RBM1CTR=PD(80.0=92.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACGCAGAGAACCAATG
R:
TGGGGTAATCTCTGCTCGAGT
Band lengths:
103-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]