DreALTA0022565-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000014244 | rbmx
Description
RNA binding motif protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
Coordinates
chr14:31518792-31519819:-
Coord C1 exon
chr14:31519711-31519819
Coord A exon
chr14:31518918-31518926
Coord C2 exon
chr14:31518792-31518917
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CACATGTTCGTGTTTTGCAGTTA
3' ss Score
8.57
Exon sequences
Seq C1 exon
CGTCCAGAGACCGGGATCCATATGGCCCCCCTCCACGCAGAGATTCTCTTATGTCACGGCGGGATGATGGTCCTCCACATCGAGATGACCACTATGGTAGTAAAGACAG
Seq A exon
TTATTCCAG
Seq C2 exon
CCGTGACTACATGAGCTCACGGGACAGCAGAGACTATGGCCCACCTCCACGAGATTATCCATACCGGGAGTATTCAGGCCATTCCAGTTCCAGAGATGACTATGGGTCAGGATCAAGAGGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014244-8-14,8-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF080816=RBM1CTR=PD(75.6=91.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTATGTCACGGCGGGAT
R:
TAGTCTCTGCTGTCCCGTGAG
Band lengths:
101-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]