GgaALTA0003352-1/2 @ galGal3
Alternative 3'ss
Description
NA
Coordinates
chr4:4423417-4423757:-
Coord C1 exon
chr4:4423643-4423757
Coord A exon
NA
Coord C2 exon
chr4:4423417-4423542
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
TCAGTTCTTGTTCGTTGTAGTTA
3' ss Score
5.94
Exon sequences
Seq C1 exon
CTCCTGTGTCACGTGGAAGAGACAGTTACGGTGGTCCTCCACGCAGAGAACCAATGCCGTCACGAAGAGATGTCTACATGTCTCCAAGAGATGATGGCTATAGCACTAAAGATGG
Seq A exon
NA
Seq C2 exon
TTACTCGAGCAGAGATTACCCCAGTTCCAGGGACACACGGGACTATGCACCACCTCCGCGTGACTATGCGTATCGTGATTATGGTCATTCCAGTTCACGTGATGAATACCCCTCCAGGGGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006457-13-13,13-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF080816=RBM1CTR=PD(80.0=92.3)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCACGCAGAGAACCAATG
R:
TGGGGTAATCTCTGCTCGAGT
Band lengths:
103-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]