RnoALTA0035438-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3862269-3862741:-
Coord C1 exon
chr3:3862604-3862741
Coord A exon
NA
Coord C2 exon
chr3:3862269-3862363
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TGATGCTCCCTCATTCACAGATG
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGGGTCCAGAGCTCGCTATGTGGATGTTCTCAACCCAAGTGGAACACAGCGGAGTGAACCAGCTCTTGCTCCTGCGGATTTCTTTGCTCCTCTTGCCCCGCTGCCAATCCCTTCTAACTTATTTGTACCAAACCCAG
Seq A exon
NA
Seq C2 exon
ATGCAGAAGAGTCACAACCTGCAGATGGGACTGGCTGTAGGGGACAGGCACCAGCTGGGACTCAATCTAAGGCAGAGCCCACCCTGGAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-37-42,37-41-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGGATTTCTTTGCTCCT
R:
GATTGAGTCCCAGCTGGTGC
Band lengths:
134-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]