RnoALTA0035890-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196510361-196510775:-
Coord C1 exon
chr2:196510625-196510775
Coord A exon
chr2:196510517-196510519
Coord C2 exon
chr2:196510361-196510516
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TCTCTTCTCAATCCCCTTAGAAG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GTGCTGTGAGGAGCAAAGGTCCTGTTGTTCAGTACACTCAGGATCTAACGAGTACTGGAATCCAGTTTAAGCCCATGGAGCCCCTGCAGCCTATAGTCCCACCTGCCCCGCTTCCCATGCTTCCTCTTTCCCCCCAGGCAGGCGACAGTGA
Seq A exon
AAG
Seq C2 exon
CTTAGAAAGCCAGCTTGCTCAATCACGGAAGCAAGTAGCCAAAAAGAGCACATCATTCCGACCAGGATCTGTGAGTTCTGGCCATTCCTCCCCTACTTCGCCCACACTCAGTGAAAATGTACCCCCTGGGAAAATTGGAATGAACCAGACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-26-16,26-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCCTATAGTCCCACCT
R:
TTCCGTGATTGAGCAAGCTGG
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]