RnoALTD0005183-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112274192-112275147:+
Coord C1 exon
chr3:112274192-112274286
Coord A exon
NA
Coord C2 exon
chr3:112275070-112275147
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
3' ss Seq
TCTCCTTTGTGTCCCCATAGCCA
3' ss Score
11.03
Exon sequences
Seq C1 exon
ACAGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAGGCAGAGGAGGGCAAAGACAAAACAGGGCCGGATAAACAAGGGGAAAGCCCACAG
Seq A exon
NA
Seq C2 exon
CCACGGCCTGGCCACACAGACCAGGAGAGTGAGGAGCAGCAGCAATTCCGGAACATCTTCAGGCAGATTGCAGGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-22-22,23-22-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.731
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACAGCAACAAGGAGCTG
R:
GCCTGCAATCTGCCTGAAGAT
Band lengths:
165-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]