BtaALTD0004180-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37881724-37882859:+
Coord C1 exon
chr10:37881724-37881799
Coord A exon
chr10:37881800-37881818
Coord C2 exon
chr10:37882782-37882859
Length
19 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
3' ss Seq
TTTCCTTTGTGCCTCCACAGCTA
3' ss Score
10.71
Exon sequences
Seq C1 exon
ACCGAGCAAACAGCAACAAGGAGCTGGGTGTGGACCAGGAAACAGAGGAGGGAAAAGACAACACAAGCCCTGATAA
Seq A exon
GCAAGCAAAATCCCCACAG
Seq C2 exon
CTAGAGCCTGGCAACACCGACCAGGAAAGTGAGGAACAGCGGCAATTCCGGAATATTTTCAGGCAGATAGCAGGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-27-24,28-24-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138331=EF-hand_8=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACAGCAACAAGGAGCTG
R:
TTCCTCACTTTCCTGGTCGGT
Band lengths:
107-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development