RnoEX0004970 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98324582-98356574:-
Coord C1 exon
chr10:98356379-98356574
Coord A exon
chr10:98353717-98353883
Coord C2 exon
chr10:98324582-98324701
Length
167 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTTTTATGTATAGGAT
3' ss Score
7.78
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATATTGGTGAGACAGAAGATGTACAAGCTGGAGGGACAAGAGGCCCAGGGAGACTTGATGGGGAGCAATTTGTCTCTTTACTTAATGAGATGAGTAAGACAAAAGGGGGCATGGCTCTCTGGTGGCAGCAACTCTGTGCAGTGACCAGGCTTCGCTTCTTGAAGTTAAAGTATAGAAGGAAATCCATCGTTATTCT
Seq A exon
GATTCTGATTTTGGGGATTGGACTTCTGCATATTCTGTCAGCAAATGTTCACAGGTTAGTCAATCAGAGTGATTACTGTTGGGAGCTCTCTCCTCATACGTACTTCCTCACACCTGGCCAACGACCACAGATGCCCCTCACAAACTTACTGATCATCAACAAAACAG
Seq C2 exon
GCAGGCGATCCAGGCCACCTTCGCAAACACAGAGAGGGGCGCCCTCCTGACCACCCATTACATGGCAGAGGCTGAGGCTGTGTGTGACCGCGTGGCCATCATGGTGTCTGGGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-19/37=18-35
Average complexity
C3*
Mappability confidence:
94%=95=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
A:
PF126982=ABC2_membrane_3=FE(15.3=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTACAAGCTGGAGGGACA
R:
TGTAATGGGTGGTCAGGAGGG
Band lengths:
242-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]