RnoEX0004989 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98374646-98377214:-
Coord C1 exon
chr10:98376988-98377214
Coord A exon
chr10:98375087-98375228
Coord C2 exon
chr10:98374646-98374831
Length
142 bp
Sequences
Splice sites
3' ss Seq
GAATTCTGTCTTTGTGTCAGGCT
3' ss Score
5.78
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCACAACAAATCACTCAGTGATGGAAGAGATGATGTCACTTACCGGAAAATACATCAAGATAGACTCTTTCATTGCGCAAGAAGGAACGACGACCGACTACTTCCTTTTTTTATGTATTATTGCTTTCTCCCCACTTACCTACTATATCTCAGCTGGTGTTACAAGAGAAAGGAAGAAGATGAAGGCCTTTATGACAGTGATGGGCCTTCGGGACTCAGCATTCTG
Seq A exon
GCTGTCCTGGGGTTTGCTCTATGGCGTCATTGTCTTCATCGTGACCCTTTTCCTGACATTCGTTGTATATTCCGTCCAATTTGTCTTTATGACTGGATTTATGATGATCTTCAGTCTCTTTTTCTTCTATGGCTTATCTCTG
Seq C2 exon
ATCTCTTTGTCTTTCTTAATGAGTGTCTTACTAAAGAAGTCTTTCCTCACCGACTTGGTGGTGTTCTTCCTCACTGTTTCCTGCGGAAGTCTTGGATTCGCAGCATTATACAGATACCTTCCTGTGTCCTTGGAGTGGCTTCTAAGTTTGCTAAGCCCTTTCGCTTTTATGCTTGGAATGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-6/37=5-7
Average complexity
S
Mappability confidence:
83%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.3=100)
A:
PF126982=ABC2_membrane_3=FE(12.1=100)
C2:
PF126982=ABC2_membrane_3=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACGACCGACTACTTCCTT
R:
TGCTGCGAATCCAAGACTTCC
Band lengths:
245-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]