GgaEX1004161 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7934362-7935532:-
Coord C1 exon
chr18:7935306-7935532
Coord A exon
chr18:7934899-7935037
Coord C2 exon
chr18:7934362-7934547
Length
139 bp
Sequences
Splice sites
3' ss Seq
CAGTAGCTCTCCACCTCCAGGCT
3' ss Score
4.61
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTGGTGGCAAATCATTCTGTTTGGGAAGAAATGAGAACAATTACTGGTGTGCGCATGAAGTCCCGCAGTGTCATCTCCTCGATTACGTTAGAGTACAGTTATTTCATGATTACTATCGTGATGTGCTTCTCTTCATTCATGTATTTCTTATCTGTGAATGTTGTAAGAGAAAAGAAGAAGCTCAAAGTACTGATGAAGTTGATGGGGCTACACGATATGGCATTTTG
Seq A exon
GCTCTCCTGGAGCCTGCTGTATGCCATCTACGTGCTGGTCCTGTCCTGCCCGCTGACTGCCCTGGTGATGAACGAGACTTTCCACAACAGCAGCTTCTCTGCCATCCTAATGCTGTTTTTCCTGTATGGCCTTGCATGT
Seq C2 exon
GTCCACCTGGTCTTCATGCTCTGCTCCCTCCTGAGAACATCCAAACTTGTGGGCTCCCTGGGATTCCTCATCACCTTTCTCTTTGGCTGCCTGAGCCTCTCAGTGCTGATAGAAAAGCTTCCAGAACCTTTGCAGTGGTTTCTCAGCCTCTTTTGTCCTTTTGCATTCAATGTTGGCATTGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.5=100)
A:
PF126982=ABC2_membrane_3=FE(12.0=100)
C2:
PF126982=ABC2_membrane_3=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGTGTGCGCATGAAGTC
R:
GGAGCCCACAAGTTTGGATGT
Band lengths:
243-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]