BtaEX6091180 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62109128-62111595:+
Coord C1 exon
chr19:62109128-62109354
Coord A exon
chr19:62111026-62111167
Coord C2 exon
chr19:62111410-62111595
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTCTTTCTATGCCAGGCT
3' ss Score
7.33
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATCACAACGAATCACTCGGTGATGGAAAACCTGATGTCAGTGACTGGTATAAATATGAAGATACTACCTTTTGTTGCCCAAGCAGGAGTTTTGACTGATTTTTTCGTTTTCTTCTGTGTTATTTCTTTTTCTGCCTTCATATACTACGTATCAGTCAGTGTTGCACAAGAAAGACAGTTCATGAAGCCACTGATGACAATGATGGGACTTCGAGAGTCGGCCTTCTG
Seq A exon
GCTGTCCTGGGGTTTGATGTACACTGGCTTCATCTCTATCACAGCCACTCTGATGGCTATTATAGTGACATATGCCCCAGTCGTCATCCTGACTGGCTTCACGGTGGTCTTCACCCTCTTTCTCCTCTACGGCCTGTCTTTG
Seq C2 exon
ATAACGTTAGCTTTCCTGATGAGCGTGTTAGTGAAGAAACCCTTCCTTACGGGGCTGGTGGTCTTCCTCCTCACTGTCTTCTGGGGGAGCCTGGGATTCACAGCTTTGTACAGACGCCTTCCTGCGGCTTTGGAGTGGACCTTATGTCTTCTTAGCCCCTTTGCTTTCACTGCTGGAATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'11-14,'11-13,13-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.1=100)
A:
PF126982=ABC2_membrane_3=FE(12.0=100)
C2:
PF126982=ABC2_membrane_3=FE(15.6=100)
Main Skipping Isoform:
ENSBTAT00000009067fB272
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAAGCAGGAGTTTTGAC
R:
CTCCCCCAGAAGACAGTGAGG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]