RnoEX6050296 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98460600-98464730:-
Coord C1 exon
chr10:98464504-98464730
Coord A exon
chr10:98461357-98461498
Coord C2 exon
chr10:98460600-98460785
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCCTGTGTTTCTCCACCAGGCT
3' ss Score
9.19
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGACAACAAACCACTCGGTGATGGAAGAGCTGATGTCAGTGATTGGTTCGGTTATGAAGATGCAGCCTTTTATTGCCCAAGGAGGAGTCGCCACTGACTTCTTTATTTTCTTCTGTGTTATTTCCTTTTCTTCATTCATATACTATTTATCAGTCAACGTTACCCAGGAAAGGCAATCCATTACAACATTAATGGCGATGATGGGTCTTCGAGAGTCTGCTTTCTG
Seq A exon
GCTTTCCTGGGGTCTGATGTACGCTGGCTTTATCCTTGTTGTGGCTACTTTGATGTCTCTTATTGTGAAATCCACCCAAGTTGTCGTCTTAACTGGTTTCATGGTGGTGTTCCTCCTGTTTCTCCTTTATGGCCTGTCTTTG
Seq C2 exon
ATAACTTTATCTTTCCTCATGAGTGTGTTGTTAAAGAAACCATTTCTTACTGGCTTGGCTGTCTTCCTCCTTACCGTCTTCTGGGGAAGCCTGGGATTCACAGCATTGTACAAACATCTTCCTGCTTTTATGGAATGGATATTGTGTTTTCTTAGCCCCTTTGCCTTTATTAATGGAATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'4-9,'4-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.1=100)
A:
PF126982=ABC2_membrane_3=FE(12.0=100)
C2:
PF126982=ABC2_membrane_3=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTCGCCACTGACTTCTT
R:
CAATGCTGTGAATCCCAGGCT
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]