MmuEX0003038 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109973671-109976663:-
Coord C1 exon
chr11:109976437-109976663
Coord A exon
chr11:109974990-109975131
Coord C2 exon
chr11:109973671-109973818
Length
142 bp
Sequences
Splice sites
3' ss Seq
GAATTTTATTTCCACACCAGGCT
3' ss Score
4.41
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACCACAACAAACCATTCAGTGATGGAGGAACTGCTATCAGTGTCAGGGAAATTCATGAAGATCCATCCTTTTGTCCGTCAAGAAGGAATTCTGACTGATTTCTTTATTTTCACCTGCATCATTTCCTTCTCCCCAATCACCTATTATGTGTCAATCAATGTTGCAAGAGAGAGGAAAAGGATGAAGGGCTTGATGATGATGATGGGCCTTCGAGATCCAGCATTCTG
Seq A exon
GCTATCTTGGGGTCTGCTCTATGCTGGCTTTGTCTTCATTATGGCTCTATCCCTGGCACTTGTTATCAAATCTGTCCAGTTTTTTATTCTAACCAGCTTCATGGTGGTCTTTAGCCTCTTCCTCCTTTATGGATTATCTATG
Seq C2 exon
CTCTTACGTGTGGATTATGATTTAAATTCTAATGCACCCCCTGATCCAGCCAGTGGCTCAAATCTGATTATAGCAACCAATTTCATGCTGGTATTTGATGCGTTTTTGTATCTGGCCCTGATGATGTACTTCGAAAAAGTTCTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.2=100)
A:
PF126982=ABC2_membrane_3=FE(12.1=100)
C2:
PF126982=ABC2_membrane_3=PD(10.8=84.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCATCATTTCCTTCTCCCC
R:
CGAAGTACATCATCAGGGCCA
Band lengths:
248-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types