RnoEX0010966 @ rn6
Exon Skipping
Gene
ENSRNOG00000048166 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:RGD Symbol;Acc:1593044]
Coordinates
chr1:261033341-261038423:-
Coord C1 exon
chr1:261038158-261038423
Coord A exon
chr1:261035219-261035299
Coord C2 exon
chr1:261033341-261033550
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATGACATTTTTTTTTTCCAGAAA
3' ss Score
9.43
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
TGATGCCATTTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGCCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACTGAGTTGGTGGTCAGCAATATCACAAGACTTGTTGATTTGCCTGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGTTGCCTGGTGGGGCTGGCCCAGCATCAGGATTCTTCAGGTCTTTAATGTCTCTCAAGAGGAAGG
Seq A exon
AAAAAGGAGTGGTGTTTGGATCTCCATTGACTGAGGAAGGCATTGCTCAGATATACCAGCTGATTGAATATCTGCACAAAA
Seq C2 exon
ACTTGCGAGTAGAGGGCTTGTTTAGAGTACCAGGCAACAGTGTCCGACAGCAGCTTTTGAGGGATGCTCTCAATAATGGGACCGACATCGATTTGGATTCAGGAGAGTTTCACTCAAACGATGTAGCCACGCTGCTGAAGATGTTTCTAGGAGAGTTACCAGAGCCCCTGCTGACCCATAAACATTTTCATGTACACCTCAAAATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048166-'7-7,'7-6,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(7.4=42.9)
C2:
PF0062022=RhoGAP=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGCATCAGGATTCTTC
R:
AGCGTGGCTACATCGTTTGAG
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]