GgaEX1008757 @ galGal4
Exon Skipping
Gene
ENSGALG00000007609 | ARHGAP19
Description
rho GTPase-activating protein 19 [Source:RefSeq peptide;Acc:NP_001012927]
Coordinates
chr6:21914730-21918615:+
Coord C1 exon
chr6:21914730-21914995
Coord A exon
chr6:21918002-21918082
Coord C2 exon
chr6:21918406-21918615
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGTTATCTTTTGTTCTGCAGAGA
3' ss Score
9.07
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TGAGGCCATCTGCAATCTTGTCATCTGCAATGACTCCTCCCTTCGCAGCCAGCCCATCATCTTCAATCCCGACTTCTTTGTGGAAAAGCTGCGCCATGAAAAACCGGAGGTGTTCACAGAGCTGGTTGTCAGCAACATCACCAGGCTCATCGACCTGCCTGGGGCTGAGCTGGCCCAGCTCATGGGAGAGGAGGACCCGAAGCTGCCTGGAGCAAACAGCACGGCCTCTGGGTTTTTTCGTTCCCTGATGTCTTTGAAACGCAAGG
Seq A exon
AGAAAGGAGTGGTGTTTGGCTCCCCACTGACAGAAGAAGGCATCGCGCAGGTCTCCCAGTTAATTGAGTACCTGCACAAAA
Seq C2 exon
ATCTCCGAGCAGAAGGTTTGTTTCGGGTGCCAGGCAACAGCATCAGGCAACAGATCCTAAAGGATGCTCTGAACAGTGGTACAGATATTGACCTGGACTCCGGGGAGTTTCATTCCAATGATGTGGCCACCTTGCTTAAGATGTTCCTGGGTGAATTACCAGAGCCCCTGCTGACACACAAGCACTTCCACGCCCACCTCAAAATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007609-'4-7,'4-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(7.4=42.9)
C2:
PF0062022=RhoGAP=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAACATCACCAGGCTCAT
R:
GGCACCCGAAACAAACCTTCT
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]