HsaEX0005433 @ hg38
Exon Skipping
Gene
ENSG00000213390 | ARHGAP19
Description
Rho GTPase activating protein 19 [Source:HGNC Symbol;Acc:HGNC:23724]
Coordinates
chr10:97263420-97266125:-
Coord C1 exon
chr10:97265860-97266125
Coord A exon
chr10:97264826-97264906
Coord C2 exon
chr10:97263420-97263629
Length
81 bp
Sequences
Splice sites
3' ss Seq
CATATCATATGGTTTTTCAGAAA
3' ss Score
7.97
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
TGATGCCATCTGCAGTTTTGTGATCTGCAATGATTCTTCCCTTCGAGGTCAGCCCATTATCTTTAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCTGAGATTTTCACTGAGTTGGTGGTCAGCAATATCACAAGGCTCATCGATTTACCTGGAACTGAGTTGGCTCAGCTGATGGGGGAAGTGGACCTTAAGTTGCCTGGCGGGGCTGGCCCAGCATCAGGATTCTTCCGGTCTCTCATGTCTCTCAAGCGAAAGG
Seq A exon
AAAAAGGAGTGATATTTGGGTCCCCACTGACGGAGGAAGGCATTGCCCAGATATACCAACTGATTGAGTATCTACACAAAA
Seq C2 exon
ACTTGCGAGTAGAGGGTTTGTTTAGAGTACCGGGTAATAGTGTCCGACAGCAGATTTTAAGGGATGCTCTCAATAATGGAACTGACATTGACTTGGAATCAGGGGAATTTCACTCAAATGATGTTGCCACTTTGCTGAAGATGTTTCTAGGAGAGTTGCCGGAGCCTCTGCTGACACATAAACACTTCAATGCACACCTCAAAATCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213390-'3-3,'3-2,5-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(7.5=42.9)
C2:
PF0062022=RhoGAP=FE(43.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGTTGGTGGTCAGCAA
R:
ACAAACCCTCTACTCGCAAGT
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development