MmuEX0005812 @ mm10
Exon Skipping
Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41786558-41792012:-
Coord C1 exon
chr19:41791747-41792012
Coord A exon
chr19:41788306-41788386
Coord C2 exon
chr19:41786558-41786767
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTATGACTTTTTTTTTCCAGAAA
3' ss Score
8.86
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
TGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG
Seq A exon
AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA
Seq C2 exon
ACTTGCGAGTGGAGGGCTTGTTTAGAGTACCAGGCAACAGTGTTCGACAGCAGCTTTTGAGGGATGCTCTCAATAACGGGACTGATATTGACTTGGATTCAGGAGAGTTTCACTCAAATGATGTGGCCACGCTGCTGAAGATGTTTCTAGGAGAGTTACCCGAGCCCCTGCTGACCCATAAACATTTTCATGTACACCTCAAAATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(7.4=42.9)
C2:
PF0062022=RhoGAP=FE(42.9=100)
Main Skipping Isoform:
ENSMUST00000026150fB6061
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCCGGGAACTGAGTTGG
R:
GAGCATCCCTCAAAAGCTGCT
Band lengths:
183-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types