Special

MmuEX0005812 @ mm9

Exon Skipping

Gene
ENSMUSG00000025154 | Arhgap19
Description
Rho GTPase activating protein 19 [Source:MGI Symbol;Acc:MGI:1918335]
Coordinates
chr19:41861048-41866502:-
Coord C1 exon
chr19:41866237-41866502
Coord A exon
chr19:41862796-41862876
Coord C2 exon
chr19:41861048-41861257
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTATGACTTTTTTTTTCCAGAAA
3' ss Score
8.86
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
TGATGCCATCTGCAATTTTGTCATTTGCAATGACTCTCCCCTTCGAGGTCAGCCTATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCAGAGGTGTTCACCGAATTGGTGGTCAGCAACATCACAAGGCTTATTGATTTGCCGGGAACTGAGTTGGCTCAGCTGATGGGTGAAGTGGACCTTAAGCTGCCTGGAGGGGCTGGCCCAGCAGCAGGATTCTTCAGGTCTCTAATGTCTCTCAAGCGGAAAG
Seq A exon
AAAAAGGAGTGGTATTTGGATCTCCGTTGACGGAGGAAGGCATTGCCCAGATTTATCAGCTGATTGAATATCTGCACAAAA
Seq C2 exon
ACTTGCGAGTGGAGGGCTTGTTTAGAGTACCAGGCAACAGTGTTCGACAGCAGCTTTTGAGGGATGCTCTCAATAACGGGACTGATATTGACTTGGATTCAGGAGAGTTTCACTCAAATGATGTGGCCACGCTGCTGAAGATGTTTCTAGGAGAGTTACCCGAGCCCCTGCTGACCCATAAACATTTTCATGTACACCTCAAAATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025154_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
PF0062022=RhoGAP=PU(7.4=42.9)

							
C2:
PF0062022=RhoGAP=FE(42.9=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000026150





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000129586, ENSMUSP00000135293
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:97264826-97264906 
HIGH PSI
HsaEX0005433
(ARHGAP19)
Human
(hg19)
chr10:99024583-99024663 
HIGH PSI
HsaEX0005433
(ARHGAP19)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr26:18385115-18385195 
HIGH PSI
BtaEX6100022
([1])
Chicken
(galGal4)
chr6:21918002-21918082 
HIGH PSI
GgaEX1008757
(ARHGAP19)
Chicken
(galGal3)
chr6:23796475-23796555 
HIGH PSI
GgaEX1008757
(ARHGAP19)
Zebrafish
(danRer10)
chr22:34994422-34994502 
HIGH PSI
DreEX6099799
(arhgap19)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATTTGCCGGGAACTGAGTTGG

				
R: 
GAGCATCCCTCAAAAGCTGCT

				
Band lengths: 
183-264

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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