BtaEX6100022 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MGB9]
Coordinates
chr26:18382986-18386664:-
Coord C1 exon
chr26:18386400-18386664
Coord A exon
chr26:18385115-18385195
Coord C2 exon
chr26:18382986-18383195
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATTGTATGGCTTTTTTCAGAAA
3' ss Score
7.04
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GAAGCTATCTGCAACTTTGTCATCTGCAATGACTCTTCCCTTCAAAGTCAGCCCATTATCTTCAATCCTGACTTTTTTGTGGAGAAACTCCGACATGAGAAACCTGAGGTGTTCACTGAGTTGGTGGTCAGCAATATTACAAGACTTATTGATCTACCTGGAACTGAGTTGGCTCAGCTAATGGGAGAAGAGGACCTTAAGTTGCCTGGTGGGGCAGGCCCGGCATCAGGATTCTTCCGGTCTCTAATGTCTCTCAAGCGAAAGG
Seq A exon
AAAAAGGAGTAGTCTTTGGATCCCCACTGACAGAGGAAGGCATTGCCCAGATATACCAACTGATTGAATATCTACACAAGA
Seq C2 exon
ACTTACGAGTAGAGGGTTTGTTTAGAGTACCAGGGAATAGTGTCCGACAGCAGATTTTAAGAGATGCTCTCAATAATGGAACTGATATTGACTTGGAATCAGGGGAGTTTCACTCAAATGATGTTGCTACCTTGCTGAAGATGTTTCTAGGAGAGTTACCTGAGCCCCTGCTGACACATAAACATTTTCACGCACACCTCAAAATTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040427-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(7.4=42.9)
C2:
PF0062022=RhoGAP=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTACCTGGAACTGAGTTGGC
R:
TGCTGTCGGACACTATTCCCT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]