DreEX6099799 @ danRer10
Exon Skipping
Gene
ENSDARG00000083189 | arhgap19
Description
Rho GTPase activating protein 19 [Source:ZFIN;Acc:ZDB-GENE-100922-157]
Coordinates
chr22:34993838-35000180:-
Coord C1 exon
chr22:34999915-35000180
Coord A exon
chr22:34994422-34994502
Coord C2 exon
chr22:34993838-34994047
Length
81 bp
Sequences
Splice sites
3' ss Seq
ATTGTCGTATTTATTTTCAGACA
3' ss Score
8.4
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGGCACTGTGTGCAATGTTGTGATCAATCAAGAGTCCGAAACAGGCAGTAGTGGCGAGGGTCGGCCGCCCATTATCTTCAACCCCGACTTCTTTGTGGAGAAGATGCGTCATGAGCGTCCCGAAGCCTTCACCGAGCTGGTGCTGAGTAACATCACCCGGCTCATCGACCTCCCAGGGGCCGAATTCTCACAGCTACTAGGCGACGAGGAACCCAAGACTCCCAACGCTGGCTTTTTCCGCTCCTTCAACTTCCTGAAACGTAAAG
Seq A exon
ACAAAGGTGTTGTGTTCGGCATGCCCCTCACAGAAGAAGGAATAGCCCAGATATATCAGCTCATCGCTTACCTCAGCAAAA
Seq C2 exon
ATCTCCATGTGCAGGGTCTGTTTCGAGTTCCTGGGAACAGTCTGAGGCAGCAGACGCTGAGAGAGCAGCTCAACAGTGGAGCCGATATTGACTTCGCCGCTGGTGACTTTCATCCCAATGACGTGGCCACGCTCCTCAAGAGTTTCTTGGGAGAATTGCCTGAGCCCCTGCTGACCCACCGCCACCTGCACGCCCACCTGAAGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000083189-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
PF0062022=RhoGAP=PU(7.4=42.9)
C2:
PF0062022=RhoGAP=FE(42.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCGAATTCTCACAGCTAC
R:
TCCACTGTTGAGCTGCTCTCT
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]