RnoEX0018997 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135771449-135773107:-
Coord C1 exon
chr6:135772997-135773107
Coord A exon
chr6:135771641-135771783
Coord C2 exon
chr6:135771449-135771554
Length
143 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTGTTCTATGAGGAGGAG
3' ss Score
-9.55
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
CTGGAAGCTCGGCTTGAGGACGCAGTCGCTGAGGCCTCCAAGGAGAGGAAGCTTCGAGAGCACAGTGAGAGCTTCTCTAAGCAGATGGAGCGCGAGCTCGAGACCCTCAAG
Seq A exon
GAGTTGGTCCGCCGAGAGGCCTCCCATGTGCTAGAAGTAAAGAATGTGAAGAAGGAGGTGCACGAATCTGAAAGCCACCAGTTGGCCCTGCAGAAAGAGGTCCTGATGCTGAAAGATAAGTTAGAAAAGTCAAAACGAGAACG
Seq C2 exon
GCACAGTGAGATGGAGGAGGCCATAGGTGCCATGAAAGACAAGTACGAACGGGAGAGGGCCATGCTGTTCGACGAGAACAAGAAGTTAACAGCAGAAAACGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'30-30,'30-29,31-30
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.439 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGCTGAGGCCTCCAAG
R:
CTTTTCGTTTTCTGCTGTTAACTTCT
Band lengths:
194-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]