BtaEX6078832 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69304140-69305680:-
Coord C1 exon
chr21:69305570-69305680
Coord A exon
chr21:69304320-69304564
Coord C2 exon
chr21:69304140-69304245
Length
245 bp
Sequences
Splice sites
3' ss Seq
GTCCCAACCTTTGTCCTCAGATG
3' ss Score
9.33
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CTGGAGGTGCAGCTCGAGGACGCGGTGGCCGAGGCCTCCAAGGAGCGAAAGCTGCGGGAGCACAGTGAGAACTTTTCCAAGCAAGTGGAGAGCGAGCTCGAGGCCCTCAAG
Seq A exon
ATGAAGCAGGGGGGCCGTGGGCCAGGTGCCGCCCTAGAACATCAGCAGGAGATTTCCAAGATAAAATCTGAGCTCGAGAAGAAAGTCCTGTTTTATGAAGAGGAGCTGGTGAGACGCGAGGCCTCCCACGTGCTGGAGGTGAAGAACGTGAAGAAGGAGGTGCACGACTCCGAAAGCCAGCAGCTGGCCCTGCAGAAAGAGGTGATGGTGCTGAAGGACAAGCTGGAGAAGTCCCGGCGAGAGCG
Seq C2 exon
GCACAGCGAGATGGAGGAGGCCGTGGGCACCATCAGGGATAAGTACGAGCGGGAGAGGGCGATGCTGTTCGAGGAGAACAAGAAGCTGACTGCCGAGAACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=0.427 C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGCAGCTCGAGGA
R:
CTTCTCGTTCTCGGCAGTCAG
Band lengths:
215-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]