MmuEX6083045 @ mm9
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112556647-112558299:-
Coord C1 exon
chr12:112558189-112558299
Coord A exon
chr12:112556840-112557084
Coord C2 exon
chr12:112556647-112556752
Length
245 bp
Sequences
Splice sites
3' ss Seq
ATTTCAACCTTCCTCTGAAGGTA
3' ss Score
8.08
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
CTGGAAGCTCGGCTTGAGGACGCAGCTGCCGAGGCCTCTAAGGAGCGGAAGCTCCGAGAACACAGCGAGAGCTTCTGTAAGCAGATGGAGCGCGAGCTCGAGGCCCTCAAG
Seq A exon
GTAAAGCAAGGAGGCCGGGGGCCAGGGGCCGCGTCGGAACATCAGCAGGAGATCTCCAAAATCAGGTCGGAGCTCGAGAAGAAAGTCTTGTTCTACGAGGAGGAGCTGGTGCGCCGAGAGGCCTCCCACGTGCTAGAAGTAAAGAACGTGAAGAAGGAAGTCCACGACTCCGAAAGCCACCAGTTGGCCCTGCAGAAAGAGGTCCTGATGCTGAAAGACAAGTTAGAAAAGTCAAAGCGAGAACG
Seq C2 exon
GCACAGTGAGATGGAGGAGGCCATAGGCACCGTGAAGGACAAGTACGAACGGGAGAGGGCCATGCTGTTCGATGAGAACAAGAAGTTAACAGCAGAAAACGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'13-19,'13-17,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=0.439 C2=0.333
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.1=100)
A:
PF0157614=Myosin_tail_1=FE(22.8=100)
C2:
PF0157614=Myosin_tail_1=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGAGGACGCAGCTG
R:
TTCGTTTTCTGCTGTTAACTTCTTGT
Band lengths:
204-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: