MmuEX6083045 @ mm10
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111318436-111320088:-
Coord C1 exon
chr12:111319978-111320088
Coord A exon
chr12:111318629-111318873
Coord C2 exon
chr12:111318436-111318541
Length
245 bp
Sequences
Splice sites
3' ss Seq
ATTTCAACCTTCCTCTGAAGGTA
3' ss Score
8.08
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
CTGGAAGCTCGGCTTGAGGACGCAGCTGCCGAGGCCTCTAAGGAGCGGAAGCTCCGAGAACACAGCGAGAGCTTCTGTAAGCAGATGGAGCGCGAGCTCGAGGCCCTCAAG
Seq A exon
GTAAAGCAAGGAGGCCGGGGGCCAGGGGCCGCGTCGGAACATCAGCAGGAGATCTCCAAAATCAGGTCGGAGCTCGAGAAGAAAGTCTTGTTCTACGAGGAGGAGCTGGTGCGCCGAGAGGCCTCCCACGTGCTAGAAGTAAAGAACGTGAAGAAGGAAGTCCACGACTCCGAAAGCCACCAGTTGGCCCTGCAGAAAGAGGTCCTGATGCTGAAAGACAAGTTAGAAAAGTCAAAGCGAGAACG
Seq C2 exon
GCACAGTGAGATGGAGGAGGCCATAGGCACCGTGAAGGACAAGTACGAACGGGAGAGGGCCATGCTGTTCGATGAGAACAAGAAGTTAACAGCAGAAAACGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'28-26,'28-23,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=0.439 C2=0.333
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.1=100)
A:
PF0157614=Myosin_tail_1=FE(22.6=100)
C2:
PF0157614=Myosin_tail_1=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGAGGACGCAGCTG
R:
TTCGTTTTCTGCTGTTAACTTCTTGT
Band lengths:
204-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types