GgaEX6039105 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49839612-49840675:-
Coord C1 exon
chr5:49840565-49840675
Coord A exon
chr5:49839893-49840137
Coord C2 exon
chr5:49839612-49839717
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCCACTCTTCTGCAGGTG
3' ss Score
11.03
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGAATCCCAACTCGAAGAAGTTATGGCAGAAGCATCAAAAGAACGCAAGCTTCGTGAACACAGTGAGGTCTTCTGCAAACAACTGGAAAATGAACTGGAAGCTCTGAAG
Seq A exon
GTGAAGCAGGGGGGGCGGGCAGCAGGTGCCACACTAGAACATCAGCAGGAGCTTTCCAAAATGAAGGCTGAGCTGGAAAAGAAAATCTTATTTTATGAAGAGGAGCTGGTCCGGCGAGAAGCATCTCATGTTCTAGAAGTAAAAAATGTGAAAAAGGAAGTACACGATTCAGAGAGCCATCAGCTTGCACTGCAGAAAGAGATAATGATACTGAAGGATAAATTAGAGAAAACGAAGCGAGAGAG
Seq C2 exon
GCATAGTGAAATGGAGGAAGCAGTGGGATCAATGAAAGAGAAATACGAGCGTGAAAGATCTATGCTCATAGAAGATAACAAAAAGTTAACAACAGAAAATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'18-23,'18-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.297 A=0.402 C2=0.528
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.1=100)
A:
PF0157614=Myosin_tail_1=FE(22.8=100)
C2:
PF0157614=Myosin_tail_1=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAATCCCAACTCGAAGAAGT
R:
ATGAGCATAGATCTTTCACGCTCG
Band lengths:
180-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]