DreEX6044367 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18541384-18547848:-
Coord C1 exon
chr20:18547738-18547848
Coord A exon
chr20:18543736-18543983
Coord C2 exon
chr20:18541384-18541489
Length
248 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGTTTGTGTTTCAGGTG
3' ss Score
11.43
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
CTGGAGTCTCAGCTGGAGGATGCGCGTGCCGAAGCTTCTAAGGAGCGTAAACTTCGAGAGCACAGTGAGGTTTACTCCAAACAACTGGAGAGTGAACTGGAGACACTCAAG
Seq A exon
GTGAAGCAGGGCGCAGGTCGTGCGTCAGGCCTCGGTGCAGAGACTCAGCAGGAGCTCACCAAACTCAAGTCTGAGCTAGATAAGAAAGGACTGTATTATGAGGAAGAGCTGGTGAGACGTGAAGCCAGTCACACTACAGAGATGAAAAACCTGAGGAAGGAGCTCCAGGACTCTGAGGGTCAGCAGCTCTCCCTGCACAAAGAGCTGCTTGCGCTTAAAGAAAAACTGGAAAAGGCCAAGAGAGAACG
Seq C2 exon
GCAAATTGAGATGGAAGAGGCCATTAATGCCCTGAAAGAGCAGTATGAACGTGAACGCAACCTTATGAGTGAAGACAACCGCAAACTCACTGCAGAAACAGACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=0.542 C2=0.583
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(13.3=100)
A:
PF0157614=Myosin_tail_1=FE(30.4=100)
C2:
PF0157614=Myosin_tail_1=FE(13.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCTCAGCTGGAGGATG
R:
CCGGTCTGTTTCTGCAGTGAG
Band lengths:
216-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]