RnoEX0019612 @ rn6
Exon Skipping
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160381615-160383393:-
Coord C1 exon
chr5:160383299-160383393
Coord A exon
chr5:160382151-160382248
Coord C2 exon
chr5:160381615-160381743
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCCCCCAACCCCCACCCCAGGTC
3' ss Score
6.05
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTCTCAGCTGCGGGTACCCCACTTACGAGGTCCAGCATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCAGTCCCAACAGCTGGCCCTGGCAG
Seq A exon
GTCTCCCTGCAGTACCTTTCCTCTGGAAAGTGGCACCACACCTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACCGCTGCCCATTGTATCAG
Seq C2 exon
CAACTCTAGGACCTACCGCGTGCTGCTGGGCCGACACAGCCTCTCCACCTCGGAATCCGGCTCACTGGCTGTTCAGGTCTCCAAGCTTGTGGTCCATGAGAAGTGGAACGCTCAAAAGCTCTCCAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=43.8)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCCACTTACGAGGTCCA
R:
GACCACAAGCTTGGAGACCTG
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]