RnoEX0022794 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87132179-87136649:-
Coord C1 exon
chr8:87136377-87136649
Coord A exon
chr8:87132938-87133184
Coord C2 exon
chr8:87132179-87132451
Length
247 bp
Sequences
Splice sites
3' ss Seq
GAGCACCACGAAACCTGAAGGTG
3' ss Score
-1.77
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CTTATGTGCCGCCAAAGGATCTGAGATTTACTCAGGTAACTGCTAATAGTTTCAAAGCTGAATGGTCTCCTGCTGGAGACAACGTCTTCTCGTATCACATCACGTACAAGGACACTACTGGTGACGATGAGGTCACAGTGGTGGAGCCAGCCTCCAGCACCAGTGTTGTTCTCAGCAACCTGAAACCAGAGACCCTGTACTTGGTGAATGTGACGGCAGAGTATGAGGATGGCTTCAGCGTCCCTGTAGTTGGGGAGGAGACCACGGCTGAAG
Seq A exon
GTGACTGATGAGACGACGGACAGTTTTAAAATTACCTGGTCTCAAGCTCCAGGGAGAGTCTTAAGGTACCGAATTATGTACAGACCAGTTTCTGGTGGAGAAAGTAAAGAAGTCAGTACTCCAGCCAACCAGAGGAGGAAAACACTGGAGAACCTGACGCCAGACACAAAGTATGAAATATCTGTAATTGCTGAATATTCATCCGGACCTGGCTCTCCACTGACAGGAAGTGCAGCCACTGAAGAAG
Seq C2 exon
TTAGAGGGAATCCAAGAGACTTAAGAGTTTCTGATGCCACGACATCAACGCTGAAGTTGACTTGGAGTGGGGCCCCAGGAAAAGTGAAGCAGTATCTTGTCACATACACCCCAGCAGCAGGAGGTGAAACTCAGGAGGTCACTGTGAGAGGGGATACAACCACCACGGTGTTGAGGAACTTGAAGGAAGGGACACAGTACGACTTATCTGTGACAGCACTGTATGCGTCTGGGGCTGGTGAGGCCCTTTCTGGAAAAGGGACAACACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'22-21,'22-20,23-21
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.522 C2=0.478
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.0)
A:
PF0004116=fn3=WD(100=89.1)
C2:
PF0004116=fn3=WD(100=87.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCAGTGTTGTTCTCAGC
R:
CAAGTTCCTCAACACCGTGGT
Band lengths:
300-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]