MmuEX0012130 @ mm9
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79539967-79545480:-
Coord C1 exon
chr9:79545208-79545480
Coord A exon
chr9:79541171-79541443
Coord C2 exon
chr9:79539967-79540239
Length
273 bp
Sequences
Splice sites
3' ss Seq
GATGTATTTTTAAATTTCAGTAA
3' ss Score
6.05
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CTTACGTTCCACCAAAGGATCTGAGGTTTACTCAGGTAACTGCTAATAGTTTCAAAGCTGAATGGTCTCCTCCTGGAGACAATGTCTTTTCGTATCACGTCACATACAAGGATGCTAATGGTGATGATGAGGTCACAGTGGTGGAGCCAGCCTCCAGCACTAGTGTTGTTCTCAACAACCTGAGGCCAGAAACCCTGTACTTGGTGAATGTGACAGCCGAGTATGAGGACGGCTTCAGTGTTCCTATAACTGGGGAGGAGACCACTGCAGAAG
Seq A exon
TAAAAGGAGTTCCACGAAACCTGAAGGTGACAGATGAGACTACGGACAGTTTTAAACTTACCTGGTCCCAAGCTCCAGGGAGAGTCTTAAGGTATCGGATTAGATACAGACCAGTTTCTGGTGGAGAAAGCAAAGAAGTGAGTACCCCAGCCAATCAGAGGAGGAAAACACTGGAGAATCTGACGCCCGACACAAAATATGAAATATCTGTGATTGCTGAATATTCCTCGGGACCTGGATCTCCACTGACAGGAAATGCAGCCACTGAAGAAG
Seq C2 exon
TTAGAGGGAATCCAAGAGACCTAAGAGTTTCTGATGCTACGACATCAACGCTGAAGTTGTCTTGGAGTAGGGCACCAGGAAAGGTGAAGCAATATCTTGTCACATACACCCCAGCAGCAGGAGGTGAAACTCAGGAGGTCACTGTGAGAGGAGATACAACCACTACCATGTTGAGGAAATTGAAGGAAGGGACACAGTATGACTTATCTGTGACAGCACTGTATGCGTCTGGGGCTGGCGAAGCCCTTTCTGGAAAAGGATCAACTCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'13-12,'13-11,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.196 A=0.554 C2=0.511
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.0)
A:
PF0004116=fn3=WD(100=89.1)
C2:
PF0004116=fn3=WD(100=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATGGTCTCCTCCTGGA
R:
TGGTGCCCTACTCCAAGACAA
Band lengths:
294-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: