GgaEX1016326 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83567263-83570381:+
Coord C1 exon
chr3:83567263-83567535
Coord A exon
chr3:83568878-83569150
Coord C2 exon
chr3:83570106-83570381
Length
273 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTATTTTTTGCAGTTA
3' ss Score
8.54
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
CTTACGTACCTGCAAAGAACATGGTCTTTTCTGACGTAACATCTGACAGTTTCAAAGTGAGCTGGTCTGCAGCTGGATCTGAGGTTTTGTCCTATCTCATTAAATATAAAGTAGCAATCGGCGGAGATGAATTCATTGTTTCAGTCCCAGCTTCAAGTACTAGCTCAGTTCTCACCAACTTGCTGCCTGAGACTACTTATGCAGTCAGTGTGATTGCTGAATATGAAGATGGCGATGGCCCTCCTTTGGATGGAGAGGAAACCACGTTAGAAG
Seq A exon
TTAAAGGTGCTCCTCGAAACTTAAGGATAACAGATGAAACCACTGACAGCTTTATAGTTGGCTGGACTCCAGCTCCAGGAAATGTTCTAAGGTACAGGCTTGTATACAGACCACTTACTGGAGGAGAAAGGAGACAAGTGACTGTCTCAGCAAACGAAAGATCGACTACTCTGCGGAACTTGATTCCAGATACAAGATATGAAGTGTCTGTTATTGCTGAGTATCAGTCTGGGCCTGGCAATGCACTGAATGGATATGCAAAAACTGATGAAG
Seq C2 exon
CAGTTCGGGGAAATCCAAGAAATCTGAGAGTTTCTGATGCTACAACATCAACAATGAAGCTGTCTTGGAGTGCTGCTCCTGGCAAAGTGCAACAGTACTTTATAACTTACACACCAGTCGCAGGAGGTGAAACTAAGGAATTGACTGTGAAAGGTGACACTACCTCTAAAGTGCTGAAAGGTTTAGATGAAGCCACTAGGTATGCATTGACTGTGTCTGCCTTGTACGCCTCTGGAGCAGGAGAAGCCCTTTCTGGAGAGGGAGAAACACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'14-14,'14-13,15-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.354 C2=0.414
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=87.0)
A:
PF0004116=fn3=WD(100=87.0)
C2:
PF0004116=fn3=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGAGAGGAAACCACGT
R:
TTCTCCCTCTCCAGAAAGGGC
Band lengths:
293-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]