RnoEX0022983 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82754818-82755484:+
Coord C1 exon
chr10:82754818-82754871
Coord A exon
chr10:82755254-82755298
Coord C2 exon
chr10:82755386-82755484
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTTCCTCTTTCTACCCTCAGGGT
3' ss Score
11.3
5' ss Seq
AGAGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
GGTCTTCCTGGTCCCGCTGGTCCTCCTGGTGAAGCAGGCAAGCCTGGTGAACAG
Seq A exon
GGTGTTCCTGGAGACCTTGGTGCCCCTGGACCCTCTGGCGCAAGA
Seq C2 exon
GGCGAGAGAGGTTTCCCTGGTGAACGTGGTGTACAAGGTCCCCCAGGTCCTGCTGGTCCCCGAGGAAACAATGGTGCCCCCGGCAACGATGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'56-38,'56-37,58-38
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(45.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCCTGGTCCCGCT
R:
GGCACCATTGTTTCCTCGGG
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]